Alternatives and similar repositories for bam-js

Users that are interested in bam-js are comparing it to the libraries listed below

• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆26Updated last year
• roryk / tiny-test-data
  Super small biological datasets for unit testing
  ☆62Updated 6 years ago
• SciLifeLab / TIDDIT
  TIDDIT - structural variant calling
  ☆77Updated 7 months ago
• slowkow / pytabix
  Retrieve data in genomic intervals with a Python interface for tabix.
  ☆82Updated 8 years ago
• aryeelab / umi
  Preprocessing tools for unique molecular index (UMI) sequencing reads
  ☆31Updated 2 years ago
• igvteam / igv.js-flask
  Example project for integrating igv.js and flask
  ☆26Updated 6 months ago
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆22Updated 6 years ago
• biowdl / germline-DNA
  A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample
  ☆26Updated 2 years ago
• macarthur-lab / gnomad_browser
  gnomAD browser pre-ASHG 2018
  ☆33Updated 5 years ago
• hms-dbmi / chromoscope
  Interactive multiscale visualization for structural variation in human genomes
  ☆70Updated last week
• refgenie / refgenie
  Reference genome resource manager
  ☆74Updated last year
• bow / crimson
  Bioinformatics tool outputs converter to JSON or YAML
  ☆35Updated 5 months ago
• GooglingTheCancerGenome / sv-channels
  Deep learning-based structural variant filtering method
  ☆39Updated last year
• brentp / cigar
  simple library for dealing with SAM cigar strings
  ☆41Updated 4 years ago
• VALIS-software / valis-hpgv
  High performance WebGL genome visualization
  ☆15Updated 4 years ago
• nspies / svviz2
  for visual evaluation of read support for structural variation
  ☆55Updated last year
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆51Updated 10 months ago
• sigven / vcf2tsvpy
  Genomic VCF to tab-separated values
  ☆47Updated 2 years ago
• pachterlab / kma
  Keep Me Around: Intron Retention Detection
  ☆29Updated 6 years ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆30Updated 2 months ago
• aidenlab / JuiceboxLegacy
  OLD REPOSITORY - Go to
  ☆31Updated 7 years ago
• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆80Updated 9 months ago
• jordanlab / tagore
  The script presents a simple way to visualize features on human chromosome ideograms
  ☆42Updated 6 months ago
• dpryan79 / libBigWig
  A C library for handling bigWig files
  ☆81Updated 10 months ago
• jeremymcrae / clinical-filter
  filtering trio-based genetic variants in VCFs for clinical review
  ☆21Updated 5 years ago
• sigven / gvanno
  Generic human DNA variant annotation pipeline
  ☆59Updated last year
• marcelm / dnaio
  Efficiently read and write sequencing data from Python
  ☆68Updated last month
• guigolab / grape-nf
  An automated RNA-seq pipeline using Nextflow
  ☆37Updated last year
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆55Updated last week
• quinlan-lab / vcf2db
  create a gemini-compatible database from a VCF
  ☆56Updated 4 years ago