Parse BAM and BAM index files in javascript for node and the browser
☆25Feb 14, 2026Updated 2 weeks ago
Alternatives and similar repositories for bam-js
Users that are interested in bam-js are comparing it to the libraries listed below
Sorting:
- Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser☆14Dec 24, 2025Updated 2 months ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Jan 6, 2023Updated 3 years ago
- High performance WebGL genome visualization☆15Oct 22, 2021Updated 4 years ago
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Jan 23, 2022Updated 4 years ago
- HiGlass track for displaying arcs between disconnected regions☆10Dec 13, 2022Updated 3 years ago
- Visualize genomic data using webgl and webworkers, in an effort to provide a fluid, high-performance user experience.☆11May 24, 2024Updated last year
- Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi☆12Jan 8, 2026Updated last month
- Open Targets Genetics UI☆15Jan 31, 2025Updated last year
- cfDNA Sequencing Pipeline with UMI☆11Dec 8, 2025Updated 2 months ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 3 years ago
- Genomic Visualization Catalog☆13Oct 6, 2022Updated 3 years ago
- 3D Genome Browser☆32Jan 22, 2022Updated 4 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆28Mar 15, 2024Updated last year
- Slides and demos from our SciPyConf 2019 talk☆13Sep 28, 2021Updated 4 years ago
- Interactive visual analytic tool for exploring epigenomics data w/ associated metadata, powered by HiGlass and Gosling☆13Nov 10, 2023Updated 2 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- Genome browser to visualize and analyze genomic data☆13Nov 22, 2021Updated 4 years ago
- MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks☆16Jul 26, 2017Updated 8 years ago
- Prototype your Jupyter Widget in the browser with anywidget and JupyterLite 💡☆17Apr 7, 2025Updated 10 months ago
- Complements Minimap2 for a fast and efficient Read-Until pipeline☆14Mar 21, 2023Updated 2 years ago
- Agglomerative hierarchical clustering in JavaScript☆19Dec 17, 2024Updated last year
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆12Jul 13, 2021Updated 4 years ago
- Computes various SV statistics☆14Oct 12, 2023Updated 2 years ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 5 years ago
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆64Updated this week
- Javascript implementation of Zarr☆154Feb 20, 2026Updated 2 weeks ago
- Scalable Insets for HiGlass: a new technique for interactively exploring and navigating large numbers of annotated patterns in multiscale…☆16Dec 8, 2022Updated 3 years ago
- Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning wit…☆69Dec 14, 2022Updated 3 years ago
- ☆14May 12, 2023Updated 2 years ago
- R Shiny wrapper for Gosling.js - Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization☆18Jun 5, 2024Updated last year
- Read CRAM v3 and v2 in node or in the browser☆18Feb 14, 2026Updated 2 weeks ago
- A Jupyter widget for comparing two embeddings with shared labels by their confusion, neighborhoods, and size.☆48Nov 14, 2024Updated last year
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39May 3, 2025Updated 10 months ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆20Sep 12, 2023Updated 2 years ago
- HiC for copy Number variation and Translocation detection☆41Aug 4, 2021Updated 4 years ago
- Tools to process LIANTI sequence data☆23Feb 20, 2019Updated 7 years ago
- Super-resolution chromatin tracing 2018☆19Nov 7, 2020Updated 5 years ago
- Rust wrapper of the BWA C API☆18May 23, 2025Updated 9 months ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 6 years ago