Parse BAM and BAM index files in javascript for node and the browser
☆25Apr 30, 2026Updated this week
Alternatives and similar repositories for bam-js
Users that are interested in bam-js are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser☆14Apr 27, 2026Updated last week
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Jan 23, 2022Updated 4 years ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Jan 6, 2023Updated 3 years ago
- HiGlass track for displaying arcs between disconnected regions☆10Dec 13, 2022Updated 3 years ago
- Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi☆12Apr 27, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Real-time species-typing visualisation for nanopore data.☆13Apr 11, 2023Updated 3 years ago
- High performance WebGL genome visualization☆15Oct 22, 2021Updated 4 years ago
- Javascript implementation of Zarr☆154Feb 20, 2026Updated 2 months ago
- Repository with all my container recipes 👩🍳☆17Sep 9, 2024Updated last year
- Genomic Visualization Catalog☆13Oct 6, 2022Updated 3 years ago
- FreeHi-C pipeline for high fidelity Hi-C data simulation.☆12Jul 13, 2021Updated 4 years ago
- A container for the forna visualization software.☆22May 30, 2024Updated last year
- A command line tool to compute mapping statistics from a BAM file☆25Mar 7, 2022Updated 4 years ago
- A translator from WDL to CWL v1.2☆28Apr 13, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- cfDNA Sequencing Pipeline with UMI☆11Dec 8, 2025Updated 4 months ago
- Visualize genomic data using webgl and webworkers, in an effort to provide a fluid, high-performance user experience.☆11May 24, 2024Updated last year
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 3 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- ☆16Jun 30, 2022Updated 3 years ago
- Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning wit…☆69Dec 14, 2022Updated 3 years ago
- Agglomerative hierarchical clustering in JavaScript☆19Dec 17, 2024Updated last year
- MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks☆16Jul 26, 2017Updated 8 years ago
- Prototype your Jupyter Widget in the browser with anywidget and JupyterLite 💡☆17Apr 7, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- 3D Genome Browser☆32Jan 22, 2022Updated 4 years ago
- A Jupyter widget for comparing two embeddings with shared labels by their confusion, neighborhoods, and size.☆48Nov 14, 2024Updated last year
- Interactive visual analytic tool for exploring epigenomics data w/ associated metadata, powered by HiGlass and Gosling☆13Nov 10, 2023Updated 2 years ago
- Genome browser to visualize and analyze genomic data☆13Nov 22, 2021Updated 4 years ago
- Complements Minimap2 for a fast and efficient Read-Until pipeline☆14Mar 21, 2023Updated 3 years ago
- Read CRAM v3 and v2 in node or in the browser☆18Apr 27, 2026Updated last week
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Jan 9, 2021Updated 5 years ago
- A library for history/provenance tracking in web-based visualizations.☆23Jan 31, 2023Updated 3 years ago
- A small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.☆19Apr 21, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Fast, flexible and extensible genome browser.☆340Apr 21, 2026Updated 2 weeks ago
- Viral genome coverage evaluation for metagenomic diagnostics☆27Aug 19, 2025Updated 8 months ago
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆65Updated this week
- Profile HMM-based hybrid error correction algorithm for long reads☆21Aug 15, 2018Updated 7 years ago
- A segmentation toolkit for segment the Nanopore RNA signal.☆20Feb 18, 2025Updated last year
- ☆14May 12, 2023Updated 2 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago