Alternatives and similar repositories for higlass-scalable-insets

Users that are interested in higlass-scalable-insets are comparing it to the libraries listed below

• Novartis / peax
  Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning wit…
  ☆69Updated 3 years ago
• JEFworks-Lab / MERmaid
  WebGL-based viewer for spatially-resolved transcriptomics data
  ☆28Updated 2 years ago
• ismms-himc / visium-clustergrammer2
  Spatial Transcriptomics Dashboard
  ☆27Updated 2 years ago
• hms-dbmi / genocat
  Genomic Visualization Catalog
  ☆13Updated 3 years ago
• GMOD / tabix-js
  Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser
  ☆14Updated this week
• cmap / morpheus.js
  JavaScript matrix visualization and analysis
  ☆68Updated last year
• flekschas / hipiler
  Visual exploration of large genome interaction matrices with interactive small multiples.
  ☆13Updated 4 years ago
• hms-dbmi / upset-altair-notebook
  Jupyter Notebooks and other code for Altair-based Interactive UpSet Plots
  ☆31Updated 4 years ago
• chaichontat / samui
  A performant scientific image visualization system.
  ☆36Updated 3 weeks ago
• hms-dbmi / cistrome-explorer
  Interactive visual analytic tool for exploring epigenomics data w/ associated metadata, powered by HiGlass and Gosling
  ☆13Updated 2 years ago
• epiviz / epiviz.gl
  Visualize genomic data using webgl and webworkers, in an effort to provide a fluid, high-performance user experience.
  ☆11Updated last year
• flekschas / enhancer-gene-vis
  A tool for visualizing ABC enhancer-gene connections in the context of genetic variants.
  ☆12Updated 2 years ago
• marcos-diazg / musica
  MuSiCa - Mutational Signatures in Cancer
  ☆23Updated 2 years ago
• ismms-himc / codex_dashboard
  Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data
  ☆17Updated 2 years ago
• biothings / biothings.api
  BioThings API framework - Making high-performance API for biological annotation data
  ☆48Updated this week
• OzetteTech / comparative-embedding-visualization
  A Jupyter widget for comparing two embeddings with shared labels by their confusion, neighborhoods, and size.
  ☆48Updated last year
• pamelarussell / github-bioinformatics
  Code for Russell et al. "A large-scale analysis of bioinformatics code on GitHub"
  ☆33Updated 6 years ago
• hubmapconsortium / portal-ui
  HuBMAP Data Portal front end
  ☆13Updated last week
• HumanCellAtlas / table-testing
  requirements, examples, and tests for expression matrix file formats
  ☆22Updated 7 years ago
• greenelab / hclust
  Agglomerative hierarchical clustering in JavaScript
  ☆19Updated last year
• vector-engineering / covidcg
  A COVID-19 CoV Genetics (CG) browser to inform therapeutics development
  ☆26Updated last month
• vals / python-gprofiler
  ☆13Updated 6 years ago
• KlugerLab / t-SNE-Heatmaps
  Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq
  ☆48Updated 6 years ago
• ismms-himc / clustergrammer2
  "Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.
  ☆118Updated 2 years ago
• madprime / genevieve
  Genevieve genome report tool
  ☆14Updated 3 years ago
• 3DGenomes / TADkit
  3D Genome Browser
  ☆32Updated 3 years ago
• blekhmanlab / rxivist
  API providing access to papers and authors scraped from biorxiv.org
  ☆56Updated 2 years ago
• Caleydo / vials
  Vials is a Caleydo Web application for visualizing alternative splicing based on mRNAseq data.
  ☆13Updated 7 years ago
• WishartLab / heatmapper
  ☆56Updated 5 years ago
• yeminlan / ADEpigenetics
  Main codes for AD epigenetics paper by Nativio et al.
  ☆11Updated 6 years ago