Alternatives and similar repositories for comparative-embedding-visualization

Users that are interested in comparative-embedding-visualization are comparing it to the libraries listed below

• davisidarta / topometry
  Systematically learn and evaluate manifolds from high-dimensional data
  ☆102Updated last week
• hms-dbmi / Drug_Explorer
  Interactive & explainable GNN for drug repurposing
  ☆13Updated last year
• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆70Updated 3 weeks ago
• chaichontat / samui
  A performant scientific image visualization system.
  ☆36Updated last week
• funkyheatmap / funkyheatmappy
  Visualising data frames as funky heatmaps 📊, the Python implementation
  ☆22Updated 8 months ago
• krassowski / gsea-api
  Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
  ☆15Updated 2 years ago
• VeraPancaldiLab / tysserand
  Fast reconstruction of spatial networks from bioimages.
  ☆25Updated 6 months ago
• abdenlab / ipylangchat
  Simple Jupyter chat UI for LangChain
  ☆11Updated last year
• srivarra / annsel
  A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.
  ☆10Updated last week
• scverse / formulaic-contrasts
  Build contrasts for models defined with formulaic
  ☆13Updated last week
• JEFworks-Lab / MERmaid
  WebGL-based viewer for spatially-resolved transcriptomics data
  ☆28Updated 2 years ago
• ismms-himc / visium-clustergrammer2
  Spatial Transcriptomics Dashboard
  ☆27Updated 2 years ago
• cytomining / CytoTable
  Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
  ☆16Updated last week
• Novartis / peax
  Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning wit…
  ☆68Updated 2 years ago
• bioFAM / mofaflex
  factor models for omics data
  ☆20Updated this week
• vitessce / vitessce
  Vitessce is a visual integration tool for exploration of spatial single-cell experiments.
  ☆222Updated this week
• laminlabs / bionty
  Access & manage biological ontologies.
  ☆20Updated last week
• TissUUmaps / TissUUmapsCore
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆24Updated 2 years ago
• vitessce / vitessce-python
  Python API and Jupyter widget for Vitessce
  ☆56Updated last week
• ismms-himc / clustergrammer2
  "Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.
  ☆118Updated 2 years ago
• higlass / higlass-python
  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
  ☆60Updated 2 weeks ago
• rongstat / meta-visualization
  A spectral method for assessing and combining multiple data visualizations
  ☆50Updated 2 years ago
• hms-dbmi / cistrome-explorer
  Interactive visual analytic tool for exploring epigenomics data w/ associated metadata, powered by HiGlass and Gosling
  ☆13Updated last year
• sunericd / dynamicviz
  ☆61Updated 9 months ago
• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆47Updated 2 months ago
• GMOD / tabix-js
  Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser
  ☆14Updated 2 weeks ago
• greenelab / hclust
  Agglomerative hierarchical clustering in JavaScript
  ☆19Updated 10 months ago
• labsyspharm / visinity
  ☆17Updated last year
• miti-consortium / MITI
  Minimum Information about Tissue Imaging
  ☆20Updated 2 years ago
• oncodash / oncodash
  Clinical oncology tumor board decision support system made by the Decider project.
  ☆13Updated 4 months ago