Alternatives and similar repositories for comparative-embedding-visualization

Users that are interested in comparative-embedding-visualization are comparing it to the libraries listed below

• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆44Updated 8 months ago
• KrishnaswamyLab / Multiscale_PHATE
  Creating multi-resolution embeddings and clusters from high dimensional data
  ☆53Updated 8 months ago
• canzarlab / JVis-learn
  ☆20Updated 4 years ago
• hj-n / zadu
  A Python Library for Evaluating the Reliability of Dimensionality Reduction Embeddings
  ☆36Updated this week
• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆70Updated 10 months ago
• KlugerLab / deepcytof
  ☆18Updated 8 years ago
• vitessce / vitessce-python
  Python API and Jupyter widget for Vitessce
  ☆46Updated 2 weeks ago
• ismms-himc / visium-clustergrammer2
  Spatial Transcriptomics Dashboard
  ☆27Updated last year
• labsyspharm / visinity
  ☆16Updated 11 months ago
• oncodash / oncodash
  Clinical oncology tumor board decision support system made by the Decider project.
  ☆13Updated 4 months ago
• higlass / higlass-python
  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
  ☆59Updated last month
• VeraPancaldiLab / tysserand
  Fast reconstruction of spatial networks from bioimages.
  ☆25Updated last month
• Novartis / peax
  Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning wit…
  ☆68Updated 2 years ago
• davisidarta / topometry
  Systematically learn and evaluate manifolds from high-dimensional data
  ☆98Updated last year
• srivarra / annsel
  A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.
  ☆10Updated last week
• theislab / batchglm
  Fit generalized linear models in python.
  ☆27Updated 2 years ago
• krassowski / gsea-api
  Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
  ☆15Updated 2 years ago
• buettnerlab / convexgating
  Optimal gating strategies for flow and mass cytometry.
  ☆13Updated last month
• JEFworks-Lab / MERmaid
  WebGL-based viewer for spatially-resolved transcriptomics data
  ☆26Updated 2 years ago
• ShobiStassen / PARC
  ☆42Updated 9 months ago
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆35Updated 2 months ago
• scverse / conference-2024
  Slides and Notebooks for scverse 2024
  ☆17Updated 8 months ago
• chaichontat / samui
  A performant scientific image visualization system.
  ☆35Updated last week
• miti-consortium / MITI
  Minimum Information about Tissue Imaging
  ☆20Updated last year
• GMOD / tabix-js
  Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser
  ☆14Updated last week
• fanzheng10 / HiDeF
  HiDeF (Hierarchical community Decoding Framework)
  ☆14Updated last year
• flekschas / enhancer-gene-vis
  A tool for visualizing ABC enhancer-gene connections in the context of genetic variants.
  ☆12Updated 2 years ago
• scverse / formulaic-contrasts
  Build contrasts for models defined with formulaic
  ☆12Updated this week
• krassowski / multi-omics-state-of-the-field
  Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"
  ☆27Updated last year
• abdenlab / ipylangchat
  Simple Jupyter chat UI for LangChain
  ☆11Updated 11 months ago