Alternatives and similar repositories for peax

Users that are interested in peax are comparing it to the libraries listed below

• ismms-himc / clustergrammer2
  "Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.
  ☆118Updated 2 years ago
• shwhalen / ml-pitfalls
  Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"
  ☆45Updated last year
• greenelab / multi-plier
  An unsupervised transfer learning approach for rare disease transcriptomics
  ☆44Updated 5 years ago
• MaayanLab / biojupies
  Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
  ☆116Updated 2 months ago
• epiviz / epiviz
  EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding o…
  ☆71Updated 2 years ago
• kundajelab / dfim
  Deep Feature Interaction Maps (DFIM)
  ☆54Updated 6 years ago
• 3DGenomes / TADkit
  3D Genome Browser
  ☆32Updated 3 years ago
• pkerpedjiev / gene-citation-counts
  ☆33Updated 4 years ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆49Updated 2 years ago
• maximilianh / crisporPaper
  Code for the CRISPOR article, all data and code to create figures and analysis
  ☆42Updated 9 years ago
• ismms-himc / clustergrammer2-notebooks
  Examples using Clustergrammer2 to explore high-dimensional datasets.
  ☆40Updated 5 years ago
• cmap / morpheus.js
  JavaScript matrix visualization and analysis
  ☆65Updated last year
• kundajelab / ENCODE_downloader
  Downloader for ENCODE
  ☆32Updated 4 years ago
• JEFworks / ubit2
  User-friendly Bioinformatics Tools
  ☆18Updated 4 years ago
• greenelab / BioBombe
  BioBombe: Sequentially compressed gene expression features enhances biological signatures
  ☆66Updated last year
• higlass / higlass-python
  Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
  ☆60Updated last week
• kundajelab / genomelake
  Simple and efficient access to genomic data for deep learning models.
  ☆42Updated 5 years ago
• scottgigante / machine-learning-tutorial
  Machine learning tutorial for biologists, designed for Oz Single Cells 2019
  ☆15Updated 6 years ago
• flekschas / enhancer-gene-vis
  A tool for visualizing ABC enhancer-gene connections in the context of genetic variants.
  ☆12Updated 2 years ago
• biothings / mygene.info
  MyGene.info: A BioThings API for gene annotations
  ☆127Updated 3 weeks ago
• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆85Updated last year
• gosling-lang / gosling.js
  Grammar of Scalable Linked Interactive Nucleotide Graphics
  ☆179Updated last week
• jmschrei / avocado
  Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputatio…
  ☆119Updated 3 years ago
• stjude / proteinpaint
  Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.
  ☆33Updated this week
• higlass / clodius
  Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.
  ☆40Updated 3 months ago
• genepattern / genepattern-notebook
  Platform for integrating genomic analysis with Jupyter Notebooks.
  ☆44Updated last month
• MaayanLab / archs4
  ARCHS4 RNA-seq processing scripts and web server pages.
  ☆58Updated 4 years ago
• pamelarussell / github-bioinformatics
  Code for Russell et al. "A large-scale analysis of bioinformatics code on GitHub"
  ☆32Updated 6 years ago
• KlugerLab / t-SNE-Heatmaps
  Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq
  ☆48Updated 6 years ago
• deweylab / MetaSRA-pipeline
  MetaSRA: normalized sample-specific metadata for the Sequence Read Archive
  ☆44Updated 3 weeks ago