Novartis / peaxLinks
Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning with autoencoders
☆69Updated 3 years ago
Alternatives and similar repositories for peax
Users that are interested in peax are comparing it to the libraries listed below
Sorting:
- An unsupervised transfer learning approach for rare disease transcriptomics☆46Updated 5 years ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 5 months ago
- "Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.☆119Updated 3 years ago
- Simple and efficient access to genomic data for deep learning models.☆42Updated 6 years ago
- EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding o…☆71Updated 2 years ago
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39Updated 8 months ago
- 3D Genome Browser☆32Updated 3 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆46Updated 2 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆47Updated 9 years ago
- JavaScript matrix visualization and analysis☆68Updated last year
- Code for Russell et al. "A large-scale analysis of bioinformatics code on GitHub"☆34Updated 6 years ago
- ☆34Updated 5 years ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆62Updated 5 years ago
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆64Updated last month
- Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.☆119Updated 7 months ago
- User-friendly Bioinformatics Tools☆18Updated 4 years ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Updated 3 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆50Updated 2 years ago
- User-submitted RNA-seq data analysis tools for BioJupies.☆20Updated 6 months ago
- MetaSRA: normalized sample-specific metadata for the Sequence Read Archive☆45Updated last month
- Deep Feature Interaction Maps (DFIM)☆54Updated 6 years ago
- Literature mining for T cell relations☆23Updated 3 years ago
- Library for manipulating genomic variants and predicting their effects☆85Updated last year
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- Documentations and Tutorials of Gosling.js☆12Updated 4 years ago
- Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data☆41Updated last month
- ☆19Updated 3 years ago
- Grammar of Scalable Linked Interactive Nucleotide Graphics☆181Updated 2 weeks ago
- Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.☆20Updated 7 years ago
- BioThings API framework - Making high-performance API for biological annotation data☆48Updated last week