Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning with autoencoders
☆69Dec 14, 2022Updated 3 years ago
Alternatives and similar repositories for peax
Users that are interested in peax are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scalable Insets for HiGlass: a new technique for interactively exploring and navigating large numbers of annotated patterns in multiscale…☆16Dec 8, 2022Updated 3 years ago
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39Mar 17, 2026Updated last week
- Slides and demos from our SciPyConf 2019 talk☆13Sep 28, 2021Updated 4 years ago
- Compresso: Efficient Compression of Segmentation Data For Connectomics☆12Sep 7, 2021Updated 4 years ago
- Simple Jupyter chat UI for LangChain☆11Jul 3, 2024Updated last year
- HiGlass track for displaying arcs between disconnected regions☆10Dec 13, 2022Updated 3 years ago
- Unix-based RNA-seq quantification pipeline☆10Nov 18, 2015Updated 10 years ago
- Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser☆14Updated this week
- User-friendly Bioinformatics Tools☆18Mar 5, 2021Updated 5 years ago
- Buffer compression and transformation codecs☆37Feb 21, 2025Updated last year
- Agglomerative hierarchical clustering in JavaScript☆19Dec 17, 2024Updated last year
- DNA kmer operations for nim☆14Apr 24, 2022Updated 3 years ago
- a web-based interactive browser of a survey on ML4VIS studies☆12Aug 7, 2024Updated last year
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆47Mar 26, 2025Updated 11 months ago
- Fast, flexible and extensible genome browser.☆339Updated this week
- Lightweight converter between hic and cool contact matrices.☆75Jul 15, 2024Updated last year
- Server component for HiGlass that manages and serves tiled data☆21May 23, 2023Updated 2 years ago
- 3D Genome Browser☆32Jan 22, 2022Updated 4 years ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Jan 6, 2023Updated 3 years ago
- Grammar of Scalable Linked Interactive Nucleotide Graphics☆184Updated this week
- Parse BAM and BAM index files in javascript for node and the browser☆25Mar 5, 2026Updated 2 weeks ago
- Builds a docker container wrapping higlass-server and higlass-client in nginx☆32May 31, 2022Updated 3 years ago
- Docker for 4DN Hi-C processing pipeline☆61Nov 26, 2024Updated last year
- A fast python class for reading 2-bit files (used by UCSC genome browser)☆14Oct 10, 2025Updated 5 months ago
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆64Mar 13, 2026Updated last week
- A cool place to store your Hi-C☆231Mar 16, 2026Updated last week
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).☆10Jun 5, 2021Updated 4 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Dec 12, 2018Updated 7 years ago
- Particle dynamics and simulated annealing for chromosome structure calculation☆28Mar 15, 2024Updated 2 years ago
- 1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates☆92Jan 28, 2025Updated last year
- fast webservices based query tool for large sets of genomic features☆26May 10, 2025Updated 10 months ago
- Towards a pattern language for visualizing AI☆25Dec 14, 2022Updated 3 years ago
- A Jupyter widget for comparing two embeddings with shared labels by their confusion, neighborhoods, and size.☆48Nov 14, 2024Updated last year
- ☆14Mar 14, 2024Updated 2 years ago
- Visualize genomic data using webgl and webworkers, in an effort to provide a fluid, high-performance user experience.☆11May 24, 2024Updated last year
- pathoscore evaluates variant pathogenicity tools and scores.☆22Mar 25, 2022Updated 4 years ago
- Oxbow makes genomic data ready for high-performance analytics.☆150Updated this week
- DuckDB Extension for reading and writing FASTA and FASTQ Files☆21Jun 19, 2023Updated 2 years ago