Alternatives and similar repositories for TADkit

Users that are interested in TADkit are comparing it to the libraries listed below

• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 6 years ago
• quinlan-lab / pathoscore
  pathoscore evaluates variant pathogenicity tools and scores.
  ☆22Updated 3 years ago
• ncbi / pm4ngs
  Project Manager for NGS data analysis
  ☆30Updated last week
• lcdb / lcdb-wf
  Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis
  ☆23Updated last week
• eilbecklab / clinvar-miner
  Website to analyze conflicting assertions in ClinVar
  ☆19Updated last year
• Guannan-Wang / GOMCL
  GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions
  ☆22Updated 2 years ago
• mtw / Bio-ViennaNGS
  A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis
  ☆23Updated last month
• ncbi / magicblast
  ☆36Updated 7 months ago
• iobio / bam.iobio.io
  http://bam.iobio.io
  ☆47Updated last year
• deweylab / MetaSRA-pipeline
  MetaSRA: normalized sample-specific metadata for the Sequence Read Archive
  ☆45Updated 2 weeks ago
• higlass / clodius
  Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.
  ☆39Updated 7 months ago
• nspies / svviz2
  for visual evaluation of read support for structural variation
  ☆55Updated last year
• dnanexus / wdlTools
  WDL tools for parsing, type-checking, and more
  ☆27Updated 3 months ago
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆51Updated 2 weeks ago
• rjdkmr / gcMapExplorer
  Genome Contact Map Explorer - gcMapExplorer. Visit:
  ☆21Updated 3 years ago
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆35Updated last year
• lidaof / g3d
  Genomics 3D Visualizer
  ☆13Updated last year
• jsh58 / DMRfinder
  Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
  ☆28Updated 2 years ago
• hms-dbmi / chromoscope
  Interactive multiscale visualization for structural variation in human genomes
  ☆70Updated 3 weeks ago
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆22Updated 6 years ago
• zichner / primerDesign
  A tool to design highly specific PCR primers for the validation of genomic alterations including structural variants
  ☆47Updated 8 years ago
• boutroslab / cld
  A software for the multispecies design of CRISPR/Cas9 libraries
  ☆36Updated 3 years ago
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆34Updated 3 weeks ago
• jeremymcrae / clinical-filter
  filtering trio-based genetic variants in VCFs for clinical review
  ☆21Updated 5 years ago
• RWilton / Arioc
  Arioc: GPU-accelerated DNA short-read alignment
  ☆70Updated 6 months ago
• mskilab-org / gGnome.js
  ☆26Updated 3 years ago
• HuntsmanCancerInstitute / USeq
  180+ Java applications for analyzing next generation sequencing data from ChIPSeq, RNASeq, BisSeq, DNASeq, variant annotation/ filtering,…
  ☆18Updated last month
• sigven / gvanno
  Generic human DNA variant annotation pipeline
  ☆59Updated last year
• lpantano / seqcluster
  small RNA analysis from NGS data
  ☆37Updated last year
• YaCui / NG-Circos
  ☆32Updated 4 years ago