YeoLab / HydRALinks
☆11Updated 11 months ago
Alternatives and similar repositories for HydRA
Users that are interested in HydRA are comparing it to the libraries listed below
Sorting:
- ☆19Updated last year
- ☆20Updated last year
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 10 months ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆16Updated 4 years ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆43Updated 7 months ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆38Updated 10 months ago
- Phyla: Towards a Foundation Model for Phylogenetic Inference☆28Updated 2 months ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆20Updated 3 years ago
- A method to predict DNA shape features considering farther flanking region.☆38Updated last year
- ☆25Updated 4 months ago
- ☆86Updated 2 years ago
- Very flexible tools for plotting and analyzing all kinds of RNA structure data☆15Updated 3 weeks ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆50Updated last year
- Scripts for building computational models of gene regulation with tensorflow☆11Updated 6 years ago
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆44Updated 2 weeks ago
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆96Updated 2 years ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated last year
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆44Updated 3 weeks ago
- Repository for the paper: "SPACE: STRING proteins as complementary embeddings"☆34Updated 2 months ago
- HLA-II ligand predictor.☆46Updated 2 years ago
- GraphProt: modelling binding preferences of RNA-binding proteins☆20Updated 7 years ago
- ☆26Updated 2 years ago
- RiboNN: predicting translation efficiencies from mRNA sequences☆50Updated 3 weeks ago
- Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements☆25Updated 10 months ago
- Comprehensive Python client for the Uniprot REST API☆55Updated 4 months ago
- ☆42Updated last week
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆12Updated 3 years ago
- A pipeline for structural clustering of RNA secondary structures☆15Updated 4 years ago
- Decoding the functional networks of non-model organisms☆12Updated 2 months ago