AllenCell / cvapipe_analysisLinks
Analysis of data produced by cvapipe for the variance paper
☆24Updated 11 months ago
Alternatives and similar repositories for cvapipe_analysis
Users that are interested in cvapipe_analysis are comparing it to the libraries listed below
Sorting:
- ☆22Updated 7 months ago
- A plugin to visualise 3D spatial single cell omics☆20Updated last month
- ☆35Updated last year
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆13Updated 7 months ago
- Fast reconstruction of spatial networks from bioimages.☆25Updated 7 months ago
- Image registration (alignment) software for large microscopy images☆26Updated 2 years ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆29Updated 6 months ago
- Interactive visualization and sharing of cell tracking data in the browser☆44Updated this week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆59Updated last year
- computer vision models for single-cell phenotyping☆77Updated this week
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- 3D segmentation for cells and organoids of 3D multichannel images☆25Updated 5 months ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated last year
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 2 months ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Framework for image and flow cytometry analysis☆32Updated 2 months ago
- A Python package using Gromov-Wasserstein distance to compare cell shapes☆21Updated last month
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆30Updated 7 months ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆50Updated 10 months ago
- A platform for compiling, analyzing, and exploring tracking data☆47Updated 3 months ago
- Interactive visualization of spatial omics data☆73Updated 2 weeks ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Updated 2 months ago
- rna2seg☆17Updated 6 months ago
- An introduction to OME-Zarr for big bioimaging data☆22Updated this week
- Python API and Jupyter widget for Vitessce☆59Updated 3 weeks ago
- Piecewise alignment for layers of mosaics☆29Updated 3 months ago