AllenCell / cvapipe_analysisLinks
Analysis of data produced by cvapipe for the variance paper
☆23Updated 9 months ago
Alternatives and similar repositories for cvapipe_analysis
Users that are interested in cvapipe_analysis are comparing it to the libraries listed below
Sorting:
- A plugin to visualise 3D spatial single cell omics☆21Updated 4 months ago
- ☆20Updated 5 months ago
- Image registration (alignment) software for large microscopy images☆25Updated 2 years ago
- Fast reconstruction of spatial networks from bioimages.☆25Updated 5 months ago
- 3D segmentation for cells and organoids of 3D multichannel images☆24Updated 3 months ago
- ☆34Updated last year
- A Python package using Gromov-Wasserstein distance to compare cell shapes☆20Updated 2 weeks ago
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆13Updated 6 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- Graph-based Decoding for In Situ Sequencing☆10Updated 5 years ago
- Minimum Information about Tissue Imaging☆20Updated last year
- Framework for image and flow cytometry analysis☆30Updated last week
- Interactive visualization and sharing of cell tracking data in the browser☆40Updated 2 weeks ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated 3 weeks ago
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆54Updated last year
- ☆13Updated 3 weeks ago
- Interactive visualization of spatial omics data☆69Updated last week
- Whole slide image registration through wsireg in napari.☆12Updated 2 years ago
- rna2seg☆17Updated 5 months ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆77Updated 2 months ago
- MERlin is an extensible analysis pipeline applied to decoding MERFISH data☆35Updated 4 years ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆29Updated 4 months ago
- A multi-dimensional spatial image data structure for scientific Python.☆43Updated 2 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 10 months ago
- Python API and Jupyter widget for Vitessce☆56Updated this week
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 4 months ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Threshold independent detection and localization of diffraction-limited spots.☆37Updated 2 years ago
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆29Updated 6 months ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 3 months ago