BaseNet: A Transformer-Based Toolkit for Nanopore Sequencing Signal Decoding
☆14Aug 27, 2025Updated 7 months ago
Alternatives and similar repositories for BaseNet
Users that are interested in BaseNet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Mar 11, 2025Updated last year
- Xron - an omni basecaller for ONT reads.☆24Nov 27, 2024Updated last year
- A fully convolutional architecture for basecalling nanopore RNA sequencing data☆11Sep 26, 2024Updated last year
- An R package for finding non-adenosine residues in poly(A) tails of ONT direct RNA sequencing reads☆13Apr 1, 2026Updated last week
- SegPore is a software to segment the raw signal of nanopore direct RNA sequencing and estimate the RNA modifications.☆13Mar 3, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- ☆20Mar 31, 2025Updated last year
- End-to-end simulation of nanopore sequencing signals with feed-forward transformers☆17Nov 17, 2025Updated 4 months ago
- ☆14Oct 5, 2023Updated 2 years ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆18Sep 1, 2025Updated 7 months ago
- "nanoCEM" is a simple tool designed to visualize the features that distinguish between two groups of ONT data at the site level.☆18Oct 13, 2025Updated 5 months ago
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Jun 4, 2023Updated 2 years ago
- Matlab GUI based package for nanopore signal analysis☆25Dec 18, 2025Updated 3 months ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆19Apr 11, 2023Updated 3 years ago
- Interpretable model of sub-cellular RNA localization.☆12Dec 19, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆10Mar 27, 2026Updated 2 weeks ago
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆61Mar 5, 2025Updated last year
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Oct 12, 2022Updated 3 years ago
- ☆33Jun 12, 2024Updated last year
- Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads☆11Jan 20, 2021Updated 5 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Mar 25, 2026Updated 2 weeks ago
- ☆15Aug 22, 2023Updated 2 years ago
- Code associated with: AutoStepfinder: A fast and automated step detection method for single-molecule analysis Luuk Loeff, Jacob W J Kerss…☆11Jun 12, 2024Updated last year
- Specific Transposable Element Aligner (HERV-K)☆16Sep 12, 2019Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Dynamic, adaptive sampling during nanopore sequencing☆38Jan 28, 2026Updated 2 months ago
- Estimate locus specific human LINE-1 expression.☆39Jan 19, 2026Updated 2 months ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆44Jul 19, 2024Updated last year
- Development still in progress. A pokemon engine using Phaser & React for UI. Tiled software for maps☆11Oct 12, 2024Updated last year
- Nanopore basecalling and consensus decoding☆46Jul 22, 2022Updated 3 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- A local realigner around InDels for MethylSeq data☆12Apr 28, 2016Updated 9 years ago
- A script to sync an iCal/vcal calendar feed to a Google Calendar☆12Feb 27, 2019Updated 7 years ago
- 🥷 The open framework for building AI Assistants☆18Feb 21, 2025Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Neural multiclass ab initio reconstruction for cryo-EM.☆13Dec 5, 2024Updated last year
- A modular single-molecule analysis interface☆43Mar 2, 2026Updated last month
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆15Oct 23, 2024Updated last year
- BGI DNA Storage Kit☆44Jan 13, 2025Updated last year
- dbGaP data validation tool repo☆14May 12, 2023Updated 2 years ago
- Generate and process BAM files from Illumina sequencing instrument files☆23Feb 25, 2016Updated 10 years ago
- ☆10Nov 18, 2022Updated 3 years ago