Python interface for SIMD Smith-Waterman Library
☆37May 18, 2022Updated 4 years ago
Alternatives and similar repositories for ssw
Users that are interested in ssw are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆323Jan 15, 2026Updated 9 months ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 5 years ago
- localised duplicate detection on patterned flow cells☆10Feb 27, 2019Updated 7 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Sep 12, 2018Updated 8 years ago
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Benchmarking variant calling in polyploids☆16Nov 26, 2021Updated 4 years ago
- robust matching of small variant datasets using flexible scoring schemes☆12Mar 26, 2020Updated 6 years ago
- An algorithm for centromere assembly using long error-prone reads☆25May 25, 2021Updated 5 years ago
- Finding Maximal Exact Matches (MEMs) using a Sampled LCP Array☆10Mar 7, 2024Updated 2 years ago
- de Bruijn CompAction in Low Memory☆23Jan 15, 2016Updated 10 years ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Feb 18, 2020Updated 6 years ago
- Demographic inference from whole genomes☆13Oct 18, 2022Updated 4 years ago
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated 2 years ago
- Tool for comparing mutation calls in VCF format☆12Sep 7, 2013Updated 13 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python bindings to minimap2☆16Sep 18, 2017Updated 9 years ago
- Python library for simple and complex indels.☆13Jan 22, 2024Updated 2 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Classify sequencing reads using MinHash.☆47Apr 6, 2020Updated 6 years ago
- Robust Eukaryotic Annotation Toolkit☆18Feb 28, 2025Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆36Aug 4, 2021Updated 5 years ago
- Lightweight C++ library for reading FASTA and FASTQ files.☆12Feb 16, 2019Updated 7 years ago
- Mark duplicate reads from PacBio sequencing of an amplified library☆12Feb 26, 2025Updated last year
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30May 10, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- C++ wrapper to tabix indexer☆18Jun 27, 2025Updated last year
- A filter algorithm with program to filter an alignment or mapping file☆13May 15, 2025Updated last year
- Microassembly based somatic variant caller for NGS data☆153Jun 23, 2022Updated 4 years ago
- An efficient index for the colored, compacted, de Bruijn graph☆113Jun 19, 2026Updated 4 months ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Apr 23, 2021Updated 5 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Jun 10, 2021Updated 5 years ago
- HiFi error modeler and simulator with ploidy☆12Feb 12, 2026Updated 8 months ago
- MetaPORE – Chiu Laboratory, University of California, San Francisco☆12Nov 4, 2015Updated 10 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Sep 18, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆74Mar 1, 2019Updated 7 years ago
- Split a BAM file by haplotype support☆16Dec 13, 2017Updated 8 years ago
- Used to trim off the primer sequence from mutiplex amplicon sequencing☆24Dec 20, 2025Updated 10 months ago
- Very very long reads, indeed☆13Apr 30, 2017Updated 9 years ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Nov 18, 2018Updated 7 years ago
- Rust UMI Directional Adjacency Deduplicator☆15Nov 25, 2019Updated 6 years ago
- ☆13Jan 23, 2020Updated 6 years ago