vishnubob / sswLinks
Python interface for SIMD Smith-Waterman Library
☆38Updated 3 years ago
Alternatives and similar repositories for ssw
Users that are interested in ssw are comparing it to the libraries listed below
Sorting:
- Squeakr: An Exact and Approximate k -mer Counting System☆86Updated 11 months ago
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆71Updated 2 months ago
- Tandem Repeat Annotation Library☆25Updated 2 years ago
- ☆36Updated 9 months ago
- Fast & accurate alignment of barcoded short-reads☆32Updated 2 years ago
- a wee tool for random access into BGZF files.☆86Updated 7 years ago
- A Python library for reading and writing PacBio® data files☆41Updated last month
- An efficient index for the colored, compacted, de Bruijn graph☆111Updated last year
- Substring index for paths in a graph☆60Updated last week
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 6 months ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 7 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- Arioc: GPU-accelerated DNA short-read alignment☆70Updated 8 months ago
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Updated 8 years ago
- tools for error correction and working with long read data☆44Updated 11 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 3 years ago
- 10x Genomics Reads Simulator☆46Updated 2 years ago
- Retrieve data in genomic intervals with a Python interface for tabix.☆82Updated 8 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Updated last month
- Browser based application for viewing bam alignments☆56Updated 9 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 3 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- http://www.combio.pl/alfree☆23Updated 3 years ago
- Population Reference Graphs for the HLA and MHC.☆35Updated 7 years ago
- Query language for filtering SAM/BAM reads☆31Updated last year
- a pileup library that embraces the huge☆43Updated 5 years ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 4 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- De novo transcriptome assembler for short reads☆64Updated 7 years ago