pmelsted / BFCounterLinks
☆24Updated 7 years ago
Alternatives and similar repositories for BFCounter
Users that are interested in BFCounter are comparing it to the libraries listed below
Sorting:
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- Count kmers with a more efficient (faster) hash table☆23Updated last year
- An illumina paired-end and mate-pair short read simulator. This project attempts to model as many of the quirks that exist in Illumina da…☆66Updated 10 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.☆14Updated 9 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 7 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Developments in next generation sequencing: instruments, read lengths, throughput. See☆27Updated 7 years ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Read alignment with a multi-genome reference☆22Updated 5 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- Making diploid assembly becomes common practice for genomic study☆30Updated 7 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆20Updated 6 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Updated 6 years ago
- SVsim: a tool that generates synthetic Structural Variant calls as benchmarks to test/evaluate SV calling pipelines.☆17Updated 7 years ago
- my PhD thesis☆36Updated 5 years ago
- ☆21Updated 5 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- ☆28Updated last month
- Tools to process LIANTI sequence data☆23Updated 6 years ago
- The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data☆30Updated 7 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated 2 years ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year