EBIvariation / vcf-validatorLinks
Validation suite for Variant Call Format (VCF) files, implemented using C++11
☆135Updated 3 weeks ago
Alternatives and similar repositories for vcf-validator
Users that are interested in vcf-validator are comparing it to the libraries listed below
Sorting:
- ☆91Updated 3 years ago
- Platypus Variant Caller☆108Updated last year
- ☆82Updated 6 years ago
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆113Updated 2 months ago
- A tool set for short variant discovery in genetic sequence data.☆200Updated 4 years ago
- Tools for processing and analyzing structural variants.☆154Updated 3 years ago
- ABRA2☆92Updated 2 years ago
- An efficient FASTQ manipulation suite☆138Updated 5 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆137Updated last month
- Small utilities for working with fastq sequence files.☆124Updated 2 years ago
- VCF-kit: Assorted utilities for the variant call format☆130Updated last month
- ☆95Updated 2 years ago
- SV detection from paired end reads mapping☆117Updated 6 years ago
- Tools for early stage alignment file processing☆95Updated 6 years ago
- Structural variant detection and association testing☆108Updated 2 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- This repository contains information about latest release from Genome in a Bottle project☆74Updated 5 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- Population-scale genotyping using pangenome graphs☆189Updated 7 months ago
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆133Updated 5 years ago
- BAM Statistics, Feature Counting and Annotation☆149Updated 3 weeks ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆98Updated last year
- The nimble & robust variant annotator☆183Updated last year
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆106Updated last month
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆164Updated 11 months ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆141Updated 3 weeks ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆86Updated last month
- Filtering and profiling of next-generational sequencing data using region-specific rules☆78Updated last year