Validation suite for Variant Call Format (VCF) files, implemented using C++11
☆139Feb 5, 2026Updated 2 months ago
Alternatives and similar repositories for vcf-validator
Users that are interested in vcf-validator are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Feb 19, 2017Updated 9 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆400Aug 30, 2025Updated 7 months ago
- Allele frequency filter app☆14May 4, 2022Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- Read visualizer for structural variants☆84Aug 18, 2018Updated 7 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆28Mar 15, 2017Updated 9 years ago
- Microassembly based somatic variant caller for NGS data☆154Jun 23, 2022Updated 3 years ago
- A tool set for short variant discovery in genetic sequence data.☆205May 4, 2021Updated 4 years ago
- FermiKit small variant calls for public SGDP samples☆17Sep 22, 2016Updated 9 years ago
- cython + htslib == fast VCF and BCF processing☆440Feb 23, 2026Updated last month
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 11 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 9 years ago
- sort genomic data☆36Nov 7, 2025Updated 5 months ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆844Apr 1, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆36Aug 13, 2020Updated 5 years ago
- RTG Core: Software for alignment and analysis of next-gen sequencing data.☆49May 27, 2025Updated 10 months ago
- ☆55Jun 24, 2020Updated 5 years ago
- GenomeWarp translates genetic variants from one genome assembly version to another.☆97Jun 28, 2023Updated 2 years ago
- Interactive table from gemini output☆10Mar 5, 2019Updated 7 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Dec 14, 2020Updated 5 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆282May 21, 2025Updated 10 months ago
- Pipeline for generating RNAseq-based cancer patient reports☆11Updated this week
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jan 28, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 6 years ago
- Variant Caller Analysis Dashboard and Data Management System☆36Feb 8, 2016Updated 10 years ago
- Hemang Parikh☆11Jan 12, 2016Updated 10 years ago
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 10 months ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Dec 26, 2023Updated 2 years ago
- Online material and code base for the article Coordinates and Intervals in Graph Based Reference Genomes☆11May 2, 2017Updated 8 years ago
- Reference-based compression of SRA data☆38Mar 26, 2013Updated 13 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Apr 22, 2024Updated last year
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆40Dec 15, 2025Updated 4 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- De novo genome assembly and multisample variant calling☆112Mar 28, 2019Updated 7 years ago
- Bayesian haplotype-based mutation calling☆323Feb 13, 2026Updated 2 months ago
- tools to efficiently retrieve and calculate LD☆33Sep 3, 2021Updated 4 years ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- normalize, left-align, trim, validate and clean VCF files☆20Jul 22, 2015Updated 10 years ago
- Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing☆133Jan 27, 2020Updated 6 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Oct 30, 2023Updated 2 years ago