ernstlab / full_stack_ChromHMM_annotations
Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes
☆32Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for full_stack_ChromHMM_annotations
- Epimap processing and analysis code repository☆33Updated 2 years ago
- ☆37Updated 4 years ago
- epigenome analysis to rank transcription factors☆30Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆28Updated 3 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆43Updated 5 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 3 years ago
- ☆33Updated 5 years ago
- Estimation of Promoter Activity from RNA-Seq data☆49Updated 2 years ago
- Tutorial Website☆53Updated 3 years ago
- Estimate locus specific human LINE-1 expression.☆31Updated 2 years ago
- Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent gen…☆25Updated 3 years ago
- Links to ATAC-seq analysis tools☆50Updated 3 years ago
- Genomic coordinates of problematic genomic regions as GRanges☆28Updated 11 months ago
- HiCorr: a Hi-C data bias-correction pipeline☆27Updated last year
- A modular, containerized pipeline for ATAC-seq data processing☆54Updated 3 weeks ago
- Notes on ChIP-seq and other-seq-related tools☆22Updated 3 months ago
- Genome-wide contact analysis using sklearn☆59Updated 7 months ago
- Updated DANPOS2 to work with python3☆20Updated 8 months ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆58Updated last year
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- A Perl/R pipeline for plotting metagenes☆35Updated 3 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆64Updated 5 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆62Updated 9 months ago
- Single Cell Analysis of Five'Ends☆44Updated 7 months ago
- A computational workflow for exitron splicing identification☆13Updated 2 months ago
- Robust Allele Specific Quantification and quality controL☆37Updated 2 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆50Updated 3 years ago
- scisorseqr is an R-package for processing of single-cell long read data and analyzing differential isoform expression across any two cond…☆36Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆36Updated 2 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 3 years ago