ernstlab / full_stack_ChromHMM_annotationsLinks
Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes
☆36Updated 11 months ago
Alternatives and similar repositories for full_stack_ChromHMM_annotations
Users that are interested in full_stack_ChromHMM_annotations are comparing it to the libraries listed below
Sorting:
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Notes on ChIP-seq and other-seq-related tools☆26Updated 5 months ago
- Genomic coordinates of problematic genomic regions as GRanges☆39Updated 6 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated last month
- Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing☆28Updated 6 months ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Genome-wide assessment of differential translations with ribosome profiling data☆19Updated last month
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆48Updated 10 months ago
- Estimate locus specific human LINE-1 expression.☆35Updated 2 years ago
- ☆38Updated 5 years ago
- HiC for copy Number variation and Translocation detection☆39Updated 3 years ago
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- IDR☆31Updated 2 years ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 5 months ago
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆31Updated 2 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆70Updated 5 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆59Updated 6 months ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆66Updated 5 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- Links to ATAC-seq analysis tools☆68Updated 3 years ago
- ☆34Updated 6 years ago
- Tutorial Website☆59Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆52Updated 3 years ago
- An analysis toolkit for single-cell methylation sequencing data☆20Updated 2 weeks ago
- ☆47Updated 5 months ago
- This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge☆20Updated 5 years ago