MelbourneGenomics / cpipeLinks
The open source version of the Melbourne Genomics Health Alliance Exome Sequencing Pipeline
☆33Updated 7 years ago
Alternatives and similar repositories for cpipe
Users that are interested in cpipe are comparing it to the libraries listed below
Sorting:
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Tools for bam file processing☆55Updated 10 years ago
- An awk-like VCF parser☆56Updated last year
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 5 months ago
- Analysis from kallisto paper☆32Updated 9 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 9 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- a pileup library that embraces the huge☆43Updated 4 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Tools for producing pseudo-cgh of next-generation sequencing data☆18Updated 8 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆28Updated last week
- ☆37Updated 4 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- SV detection from paired end reads mapping☆38Updated 14 years ago
- Fast fusion detection using kallisto☆80Updated 7 months ago
- The gkno launcher for executing tools or pipelines☆31Updated 8 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Utilities to create and analyze gVCF files☆38Updated 8 years ago
- variant discovery and annotation using GATK and Ensembl☆17Updated 11 years ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- conda recipes for genomic data☆85Updated 3 years ago