arq5x / HydraLinks
☆24Updated 9 years ago
Alternatives and similar repositories for Hydra
Users that are interested in Hydra are comparing it to the libraries listed below
Sorting:
- R package to quickly obtain count vectors from indexed bam files☆15Updated 5 months ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 8 years ago
- An R package to detect, classify, and visualize genome rearrangements☆15Updated 5 years ago
- Interactive table from gemini output☆10Updated 6 years ago
- Color DNA/RNA bases in terminal output☆21Updated 8 years ago
- Data management of large-scale whole-genome sequence variant calls using GDS files (Development version only)☆46Updated last month
- Generate HTML report for a set of genomic regions or DESeq2/edgeR results☆10Updated 10 months ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- TOP results by CONfident efFECT Sizes.☆15Updated last year
- Machine learning use cases for teaching☆13Updated 8 years ago
- A utility for splitting mixed origin NGS reads☆10Updated 4 years ago
- ☆18Updated 10 years ago
- reference free variant assembly☆34Updated 2 years ago
- R Interface to the NCBI SRA metadata☆23Updated 7 years ago
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11Updated 4 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.☆32Updated 3 years ago
- materials and website for the 2016 kallisto sleuth workshop☆11Updated 9 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Updated 9 years ago
- Allele frequency filter app☆14Updated 3 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 4 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 7 years ago
- CLI to automate Nextflow pipeline testing☆12Updated 2 weeks ago
- Targeted and non-targeted anticancer drugs and drug regimens☆29Updated last week
- 16S rRNA Sequencing Data from the Human Microbiome Project☆10Updated last month
- All JBrowse plugins created by Brigitte Hofmeister☆10Updated 7 years ago
- amplicon/smMIP mapping and analysis pipeline☆11Updated 3 years ago