The first CHM1 paper (Li, 2014)
☆25Jul 9, 2014Updated 11 years ago
Alternatives and similar repositories for varcmp
Users that are interested in varcmp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated last year
- Dockerised and simplified version of SeqWare-CGP-SomaticCore☆14Mar 5, 2021Updated 5 years ago
- Brings Orbitrap mass spectrometry data to life; multi-platform, fast and colorful R package☆36May 1, 2024Updated last year
- ☆14Oct 26, 2017Updated 8 years ago
- RNA mapping pipeline☆18Jun 3, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Jan 7, 2025Updated last year
- A complete suite of tools to work with genomic variation data, from VCF tools to variant profiling or genomic statistics☆14Feb 12, 2016Updated 10 years ago
- The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data☆32Feb 20, 2018Updated 8 years ago
- Website☆16Aug 30, 2025Updated 7 months ago
- R package for querying the OMIM database☆17Sep 14, 2025Updated 7 months ago
- Example data for R/qtl2☆13Sep 17, 2021Updated 4 years ago
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 7 years ago
- Sequence to Medical Phenotypes: A pipeline featuring variant annotation, prioritization, pharmacogenomics, and tools for analyzing genomi…☆13Mar 1, 2016Updated 10 years ago
- Variant quality checking scripts.☆11Feb 4, 2016Updated 10 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jan 28, 2026Updated 2 months ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- Utility functions to extend and optimize GenomicRanges functionality.☆10Mar 6, 2025Updated last year
- Naive de Bruijn graph implementation in python☆37Oct 2, 2017Updated 8 years ago
- ☆26Dec 9, 2022Updated 3 years ago
- Fast, sensitive and accurate protein remote homology search on GPUs☆16May 6, 2024Updated last year
- Post Assembly Variants Finder☆18Mar 24, 2026Updated 3 weeks ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Feb 9, 2026Updated 2 months ago
- Easily create and manage compute clusters on any Cloud.☆38Nov 23, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- notes and materials from dbug meetings☆10Sep 26, 2018Updated 7 years ago
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- Just Another JAva Package for Sequence Analysis☆24Dec 2, 2022Updated 3 years ago
- Consensus assembly and variant calling workflow.☆12May 26, 2015Updated 10 years ago
- Published methods☆15Oct 19, 2016Updated 9 years ago
- Interactive table from gemini output☆10Mar 5, 2019Updated 7 years ago
- Packaging for convenience of installation and setup of stable diffusion on Pop☆13Sep 23, 2022Updated 3 years ago
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆23Jun 3, 2018Updated 7 years ago
- variant integration methods for the 1000 Genomes Project☆21Jan 16, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- python script to programmatically enrich your data using Enrichr API☆12Jul 5, 2017Updated 8 years ago
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆12Sep 3, 2019Updated 6 years ago
- The Industrialisation and Professionalisation of Data Science: 12 Questions☆13Aug 12, 2017Updated 8 years ago
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 4 years ago
- Compute mean telomere length from Whole Genome Sequencing data.☆15Feb 15, 2024Updated 2 years ago
- Virtual Laboratory Environment☆22Aug 26, 2024Updated last year
- A streamlit app that uses fbprophet for forecasting COVID☆10Dec 8, 2022Updated 3 years ago