Use somatic mutations to choose a personalized cancer vaccine (tumor-specific immunogenic peptides)
☆16Sep 23, 2016Updated 10 years ago
Alternatives and similar repositories for immuno
Users that are interested in immuno are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Jun 7, 2018Updated 8 years ago
- Personalized cancer epitope discovery and peptide vaccine prediction pipeline☆30Nov 14, 2017Updated 8 years ago
- Predict mutated T-cell epitopes from sequencing data☆30Updated this week
- Integrate the GA4GH schemas and probably a scala impl of the service.☆14May 20, 2016Updated 10 years ago
- Variant Caller Analysis Dashboard and Data Management System☆36Feb 8, 2016Updated 10 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Benchmarking toolkit for variant calling☆48Oct 13, 2020Updated 5 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Sep 26, 2016Updated 10 years ago
- 1,895 Git aliases and scripts☆29Aug 27, 2026Updated last month
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 11 years ago
- An algorithm for clonal tree reconstruction from multi-sample cancer sequencing data☆14Apr 1, 2018Updated 8 years ago
- IPython Integration into Galaxy☆31Jan 22, 2019Updated 7 years ago
- Parallel Recipes : parallel workflow execution made easy☆13Sep 1, 2015Updated 11 years ago
- ☆13Feb 19, 2017Updated 9 years ago
- VariantToolChest (VTC) is intended to be a powerful tool chest to analyze VCF files. I encourage anyone to contribute their tools and hel…☆25Apr 8, 2016Updated 10 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Hemang Parikh☆11Jan 12, 2016Updated 10 years ago
- Docker containers that demonstrate a proof of concept bwa alignment workflow☆14Jan 13, 2015Updated 11 years ago
- A tool to examine duplicate read characteristics in a BAM file☆12Dec 8, 2017Updated 8 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆60Apr 16, 2019Updated 7 years ago
- Core consonance utilities for scheduling, reporting on, and provisioning VMs for workflows☆14Jun 27, 2018Updated 8 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆16Jun 25, 2019Updated 7 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Mar 17, 2016Updated 10 years ago
- A configurable de novo assembly pipeline☆30Jun 29, 2016Updated 10 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python API for Genomic Data Commons☆20Sep 27, 2016Updated 10 years ago
- ConvMHC - a web server for peptide-MHC class I binding predictions using deep convolutional neural networks☆18Sep 10, 2024Updated 2 years ago
- Basic, no assumptions, multi-pileup☆24Mar 26, 2014Updated 12 years ago
- Contig Ploidy and Allele Dosage Estimation☆12Oct 30, 2015Updated 10 years ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆68Updated this week
- vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…☆42Sep 16, 2021Updated 5 years ago
- ☆15Mar 7, 2016Updated 10 years ago
- Python interface to running command-line and web-based MHC binding predictors☆109Updated this week
- Galaxy Github repository BETA 1. May be destroyed and recreated if post-conversion problems are found (but post-conversion commits on thi…☆12Feb 20, 2015Updated 11 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Apr 10, 2016Updated 10 years ago
- Population Stratification Analysis on Genomics Data Using Deep Learning☆25Sep 5, 2016Updated 10 years ago
- Fast and Accurate Classification of Sequences using Bloom filters☆16Apr 19, 2023Updated 3 years ago
- Browser based application for viewing bam alignments☆56Dec 16, 2016Updated 9 years ago
- Concordance between variant callers☆17Nov 27, 2014Updated 11 years ago
- Python interface to amino acid properties and IEDB☆57Updated this week
- Checklist for scientific papers☆21Sep 2, 2018Updated 8 years ago