Alternatives and similar repositories for cage_tutorial:

Users that are interested in cage_tutorial are comparing it to the libraries listed below

• yyoshiaki / ikra
  RNAseq pipeline centered on Salmon
  ☆27Updated 5 months ago
• vborjesson / TC_hunter
  Locate transgenic insertion sites
  ☆11Updated 2 years ago
• Linlab-slu / TSSr
  ☆11Updated last week
• AmpliconSuite / CoRAL
  Reconstruction of focal amplifications with long reads
  ☆20Updated 3 weeks ago
• WGLab / LIQA
  Long-read Isoform Quantification and Analysis
  ☆39Updated last month
• SziKayLeung / Whole_Transcriptome_Paper
  ☆18Updated last year
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆39Updated 3 years ago
• PulverCyril / craTEs
  Estimate the cis-regulatory activity of transposable element (TEs) subfamilies
  ☆10Updated last year
• Xinglab / espresso
  ☆61Updated 8 months ago
• bedapub / splicekit
  splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq
  ☆16Updated last month
• fritzsedlazeck / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆47Updated 4 years ago
• yyoshiaki / VIRTUS
  A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
  ☆34Updated 3 years ago
• editasmedicine / uditas
  Software for performing UDiTaS sequencing analysis.
  ☆13Updated 2 years ago
• ucagenomix / sicelore
  Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…
  ☆73Updated 2 years ago
• olarerin / metaPlotR
  A Perl/R pipeline for plotting metagenes
  ☆37Updated 3 years ago
• ENCODE-DCC / long-read-rna-pipeline
  ENCODE long read RNA-seq pipeline
  ☆47Updated 2 years ago
• hsinyenwu / RiboPlotR
  RiboPlotR package for Ribo-plot
  ☆15Updated last year
• dieterich-lab / single-cell-nanopore
  Workflow for Nanopore Sequencing of 10x single cell libraries
  ☆19Updated last month
• Henikoff / Cut-and-Run
  ☆30Updated 6 years ago
• BioinfoUNIBA / REDItools2
  ☆56Updated 3 years ago
• zhqingit / giremi
  GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.
  ☆43Updated 7 years ago
• comprna / CHEUI
  Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
  ☆39Updated 9 months ago
• kundajelab / idr
  IDR
  ☆31Updated 2 years ago
• mortazavilab / cerberus
  ☆19Updated 8 months ago
• genome-sci / python_bioinfo_2022
  ☆12Updated 2 years ago
• LappalainenLab / lorals
  ☆33Updated 2 years ago
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆22Updated last year
• dixonlab / hic_breakfinder
  ☆37Updated 5 years ago
• a-slide / NanoCount
  EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
  ☆59Updated 6 months ago
• nf-core / circdna
  Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…
  ☆28Updated 2 months ago