suimye / cage_tutorialLinks
Step by step tutorial for CAGE analysis
☆9Updated 4 years ago
Alternatives and similar repositories for cage_tutorial
Users that are interested in cage_tutorial are comparing it to the libraries listed below
Sorting:
- Locate transgenic insertion sites☆11Updated 2 years ago
- TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C☆110Updated 4 years ago
- Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanop…☆75Updated 2 years ago
- A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes☆67Updated last year
- Extract 3D contacts (.pairs) from sequencing alignments☆113Updated 3 weeks ago
- Quantification of transposable element expression using RNA-seq☆73Updated last year
- NGS Data Analysis Textbook Version 2 (Disease Genome Analysis)☆43Updated 4 years ago
- ☆62Updated last year
- Publication quality NGS track plotting☆114Updated 3 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆28Updated 6 months ago
- A fast and efficient tool for converting chromatin interaction data between genome assemblies☆73Updated 2 weeks ago
- ☆58Updated 3 weeks ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆68Updated last year
- Estimate the cis-regulatory activity of transposable element (TEs) subfamilies☆10Updated last year
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆93Updated 2 months ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- Software for Quantifying Interspersed Repeat Expression☆60Updated 3 years ago
- dcHiC: Differential compartment analysis for Hi-C datasets☆72Updated last year
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆80Updated 9 months ago
- Code associated with with the 2023 Nature Genetics Paper "Region Capture Micro-C reveals coalescence of enhancers and promoters into nest…☆11Updated 2 years ago
- ☆100Updated last week
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated 3 weeks ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆115Updated last month
- FEELnc : FlExible Extraction of LncRNA☆90Updated 2 weeks ago
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆65Updated last year
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- perl cworld module and collection of utility/analysis scripts for C data (3C, 4C, 5C, Hi-C)☆67Updated 6 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆116Updated 6 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 5 months ago