CompGenomeLab / PHACTLinks
This is a phylogeny workflow for batch submission to HPC cluster built with Slurm queue manager
☆10Updated last year
Alternatives and similar repositories for PHACT
Users that are interested in PHACT are comparing it to the libraries listed below
Sorting:
- ☆24Updated 9 months ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆16Updated 2 years ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13Updated last year
- WITCH is a multiple sequence alignment method that uses multiple weighted HMMs to align unaligned sequences and find consensuses.☆13Updated 2 months ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Updated 5 years ago
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆31Updated 6 years ago
- uorf4u is a bioinformatics tool for conserved upstream ORF annotation.☆13Updated 4 months ago
- ☆12Updated 6 years ago
- Influenza genome analysis Nextflow workflow☆31Updated 4 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 4 months ago
- a versatile toolkit for processing and analyzing diverse types of sequence data☆22Updated last year
- Pipeline to apply encoded Kmer analysis to protein sequences☆16Updated this week
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆35Updated last year
- Quality control for phylogenetic analyses☆13Updated 2 weeks ago
- Nanopore Real-Time Analysis Tool☆17Updated last year
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆11Updated 7 years ago
- ☆17Updated 2 months ago
- ☆17Updated 2 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 4 years ago
- ☆17Updated 7 months ago
- A Quality Control filter and parser for NCBI BLAST XML results.☆17Updated 5 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆26Updated 2 months ago
- Database of virus RdRP barcode sequences☆16Updated last year
- Espalier is a Python package for working with discordant phylogenetic trees using maximum agreement forests.☆14Updated 2 years ago
- ☆19Updated 2 years ago
- Bash scripts and data used in pantranscriptomic paper☆24Updated 3 years ago
- Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.☆23Updated 3 months ago
- Phylogenetic tools for Eco-phylogenetics☆14Updated last year
- The Dinucleotide Quantification Python Package☆11Updated 3 years ago
- Calculate the dn/ds (also pn and ps) value of cds☆13Updated 5 years ago