Alternatives and similar repositories for PHACT

Users that are interested in PHACT are comparing it to the libraries listed below

• mmcco / RepeatScout
  The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…
  ☆16Updated 2 years ago
• LKremer / showTree
  showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.
  ☆31Updated 6 years ago
• CBC-UCONN / Genome_Assembly
  ☆24Updated 9 months ago
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆37Updated 4 months ago
• songlab-cal / CherryML
  Scalable Maximum Likelihood Estimation of Phylogenetic Models
  ☆20Updated 11 months ago
• yjx1217 / NanoTrans
  An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data
  ☆14Updated 8 months ago
• fenghen360 / BLAST2OGMSA
  Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis
  ☆11Updated 7 years ago
• songlab-cal / swga2
  ☆17Updated 2 years ago
• tothuhien / lsd-0.3beta
  ☆12Updated 6 years ago
• jonassibbesen / vgrna-project-paper
  Bash scripts and data used in pantranscriptomic paper
  ☆24Updated 3 years ago
• ghzuo / CVTree
  A whole-genome and alignment-free prokaryotic phylogeny tool
  ☆23Updated 10 months ago
• martin-steinegger / kraken-protocol
  Metagenome analysis using the Kraken software suite
  ☆36Updated 3 years ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆31Updated 4 years ago
• xia-lab / Seq2Fun
  ☆17Updated 7 months ago
• carnegie / PlantClusterFinder
  ☆17Updated 2 months ago
• AnWiercze / NanopoReaTA
  Nanopore Real-Time Analysis Tool
  ☆17Updated last year
• thekaplanlab / msabrowser
  🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations
  ☆35Updated last year
• josuebarrera / GenEra
  genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
  ☆53Updated last year
• vlasmirnov / MAGUS
  Graph Clustering Merger
  ☆36Updated last year
• peng-ye / MetaPGN
  A pipeline for construction and graphical visualization of annotated pangenome networks.
  ☆17Updated 7 years ago
• mourisl / MSAplot
  Plot multiple sequence alignment (MSA)
  ☆16Updated last year
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆26Updated 2 months ago
• peterk87 / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆31Updated 4 months ago
• moshi4 / GBKviz
  Easy-to-use web application for visualization and comparison of genomes in Genbank file
  ☆22Updated 3 years ago
• JLSteenwyk / BioKIT
  a versatile toolkit for processing and analyzing diverse types of sequence data
  ☆22Updated last year
• GCA-VH-lab / uorf4u
  uorf4u is a bioinformatics tool for conserved upstream ORF annotation.
  ☆13Updated 4 months ago
• VIB-PSB / i-ADHoRe
  i-ADHoRe is a highly sensitive software tool to detect degenerated homology relations within and between different genomes.
  ☆17Updated last year
• zhutao1009 / dnds
  Calculate the dn/ds (also pn and ps) value of cds
  ☆13Updated 5 years ago
• estebanpw / chromeister
  A dotplot generator for large chromosomes
  ☆43Updated 2 years ago
• wclose / viralMetagenomicsPipeline
  Pipeline for metagenomic community analysis using DNA isolated from virus-like particles
  ☆13Updated 5 years ago