This is a phylogeny workflow for batch submission to HPC cluster built with Slurm queue manager
☆12Mar 19, 2024Updated 2 years ago
Alternatives and similar repositories for PHACT
Users that are interested in PHACT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Deleterious mutation prediction pipeline☆13Dec 16, 2024Updated last year
- Convergence analysis using relative rate and correcting for phylogenetic relatedness☆12Apr 25, 2025Updated last year
- detectRuns: a R Package for Runs of Homozygosity and Runs of Heterozygosity☆16Jun 15, 2026Updated 4 months ago
- ☆11Oct 23, 2024Updated 2 years ago
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆26Nov 21, 2023Updated 2 years ago
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆12Feb 25, 2021Updated 5 years ago
- Genomic Annotation in Livestock for positional candidate LOci☆14Feb 26, 2021Updated 5 years ago
- MP-EST estimates species trees from a set of gene trees by maximizing a pseudo-likelihood function☆13Oct 31, 2025Updated 11 months ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2026Updated last month
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- Imputation workflow for low coverage whole genome sequencing data☆10Jan 8, 2025Updated last year
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆11May 7, 2018Updated 8 years ago
- Convergent substitution detection tool based on the PCOC model☆32Dec 2, 2021Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Killer tools/packages/libraries/websits/...☆21Oct 23, 2026Updated last week
- Detecting recombination of viral lineages☆11Dec 23, 2025Updated 10 months ago
- nf-core pipeline for comparative analysis of ortholog predictions☆12Updated this week
- ☆13Oct 19, 2026Updated last week
- repository of scripts for comparative transcriptome analysis☆20Apr 10, 2019Updated 7 years ago
- A Method for Mapping Single-cell and Spatial Transcriptomics Data with Transfer Learning☆13Nov 17, 2023Updated 2 years ago
- The MafFilter genome alignment processor☆19Oct 16, 2026Updated 2 weeks ago
- ☆10Dec 20, 2024Updated last year
- ☆15May 24, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆21Oct 21, 2024Updated 2 years ago
- signatselect: Identifying signatures of selection☆12Dec 3, 2019Updated 6 years ago
- Aggregation and analyses of rare CNVs across diseases☆15Jan 25, 2023Updated 3 years ago
- A comprehensive pipeline for RNAseq data analysis☆22Aug 31, 2024Updated 2 years ago
- Selection outlier scan with population branch statistic☆14Feb 21, 2024Updated 2 years ago
- Source code for MutPred2.0☆16Mar 27, 2025Updated last year
- Chromatin ACcessibility and Transcriptomics Unifying Software☆20Oct 25, 2024Updated 2 years ago
- Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data☆20Sep 25, 2023Updated 3 years ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Estimation of per-individual inbreeding tracts under a probabilistic framework☆16Aug 11, 2023Updated 3 years ago
- ☆13Dec 16, 2021Updated 4 years ago
- Why R? 2021 Turkey konferansında sunulan çalışmaların özet, sunum ve video kayıtlarını içerir.☆11Apr 26, 2021Updated 5 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆59Aug 9, 2015Updated 11 years ago
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆19Oct 14, 2020Updated 6 years ago
- Repo to analyze population genetic data with many different methods☆15Oct 23, 2019Updated 7 years ago
- ☆14Mar 7, 2021Updated 5 years ago