gevaertlab / BetaVAEImputationLinks
☆15Updated 3 years ago
Alternatives and similar repositories for BetaVAEImputation
Users that are interested in BetaVAEImputation are comparing it to the libraries listed below
Sorting:
- Accompanying repository for GkmExplain paper☆23Updated 5 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆45Updated 2 years ago
- Wasserstein Generative Adversarial Network for analysing scRNAseq data☆34Updated 4 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago
- Deep Feature Interaction Maps (DFIM)☆54Updated 6 years ago
- Comparison of RNA-seq time course differential expression analysis tools☆13Updated 7 years ago
- Extracting disease-specific genomic coordinates from GWAS catalog☆21Updated 5 years ago
- This is a companion repository for the article "Comparative analysis of machine learning classifiers and calibration algorithms for estim…☆23Updated 3 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Updated 3 years ago
- A framework to infer mutational signatures in cancer over time☆55Updated 6 years ago
- NeuSomatic: Deep convolutional neural networks for accurate somatic mutation detection☆171Updated 3 years ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆42Updated 11 months ago
- ☆83Updated last year
- Main codes for AD epigenetics paper by Nativio et al.☆11Updated 5 years ago
- A repository for sharing information on available COVID-19 RNA-Seq datasets☆81Updated 3 years ago
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆89Updated 3 years ago
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆27Updated 7 years ago
- Data and analysis for the Splatter paper☆29Updated 7 years ago
- DeepCC: a novel deep learning-based framework for cancer molecular subtype classification☆20Updated 3 years ago
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆14Updated this week
- Classifying tumor types based on Whole Genome Sequencing (WGS) data☆48Updated last year
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆36Updated 7 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆23Updated 9 months ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆65Updated 4 years ago
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆57Updated 6 years ago
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆14Updated 5 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆60Updated last year
- BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.☆31Updated 5 years ago
- Conditional out-of-distribution prediction☆63Updated last year
- generalized principal component analysis (GLM-PCA) implemented in python☆59Updated 4 years ago