cannin / snp_plotterLinks
snp.plotter is an R package that creates publishable-quality plots of p-values using single SNP and/or haplotype data.
☆19Updated last year
Alternatives and similar repositories for snp_plotter
Users that are interested in snp_plotter are comparing it to the libraries listed below
Sorting:
- Genomic plot in trellis layout☆41Updated last year
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 6 years ago
- Transcript quantification import with automatic metadata detection☆67Updated this week
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 6 years ago
- Lollipop-diagram to interactively visualize genetic mutations☆33Updated last year
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Updated 3 months ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Examples of kallisto + sleuth☆11Updated 8 years ago
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆34Updated 7 years ago
- Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)☆32Updated 3 months ago
- Integrative analysis of structural variations.☆40Updated last year
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆31Updated 11 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆61Updated 4 months ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- Data management of large-scale whole-genome sequence variant calls using GDS files (Development version only)☆46Updated 2 weeks ago
- Bayesian hierarchical model for complex trait analysis☆44Updated last year
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 4 months ago
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆20Updated 8 months ago
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- Glimma R package☆50Updated last year