snp.plotter is an R package that creates publishable-quality plots of p-values using single SNP and/or haplotype data.
☆20Jan 19, 2024Updated 2 years ago
Alternatives and similar repositories for snp_plotter
Users that are interested in snp_plotter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Build haplotye and generate figures☆20Nov 4, 2025Updated 11 months ago
- ☆11Jan 14, 2025Updated last year
- An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations☆15Mar 6, 2018Updated 8 years ago
- Jenkins for Life Science Continuous Integration☆12Apr 28, 2017Updated 9 years ago
- Sequential lm for methylation data☆10Jan 11, 2019Updated 7 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.☆22Aug 19, 2025Updated last year
- An R package for creating 3D barplots☆12Jan 8, 2023Updated 3 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Jun 6, 2019Updated 7 years ago
- An innovative GWAS procedure for studies on germplasm population and plant breeding☆14Nov 16, 2020Updated 5 years ago
- Study of TE evolution in a population of genomes☆12Dec 11, 2023Updated 2 years ago
- ☆35Nov 11, 2025Updated 11 months ago
- Repo to analyze population genetic data with many different methods☆15Oct 23, 2019Updated 7 years ago
- LDkit: a parallel computing toolkit for linkage disequilibrium analysis☆19Sep 4, 2020Updated 6 years ago
- Discovery of genetic variants with shared effect across multiple phenotypes from GWAS summary statistics☆16Oct 27, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- PopSTR - A Population based microsatellite genotyper☆33Oct 23, 2023Updated 3 years ago
- ☆23Jan 11, 2019Updated 7 years ago
- A tool to plot significant regions of GWAS☆31Jan 27, 2023Updated 3 years ago
- Genomic Annotation in Livestock for positional candidate LOci☆14Feb 26, 2021Updated 5 years ago
- ☆19Sep 20, 2020Updated 6 years ago
- Library for generating Integra ViaLab files☆11Oct 4, 2026Updated 3 weeks ago
- Sweep Inference Framework (controlling for correlation)☆29Jul 10, 2024Updated 2 years ago
- Interactive eQTL visualizations☆14Dec 12, 2022Updated 3 years ago
- Imputation workflow for low coverage whole genome sequencing data☆10Jan 8, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Make interactive LocusZoom plots from a local GWAS file☆10May 9, 2025Updated last year
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆211Jul 16, 2026Updated 3 months ago
- cEll tyPe enrIChment☆17Dec 11, 2022Updated 3 years ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆231Jul 5, 2025Updated last year
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated 8 months ago
- Toolkit for QTL mapping and meta-analysis.☆17May 24, 2022Updated 4 years ago
- Code for preparing and running the imageCCA method.☆20Aug 2, 2017Updated 9 years ago
- Create regional association plots from GWAS or meta-analysis☆64Jan 21, 2020Updated 6 years ago
- Make LocusZoom-like plots with your own LD matrix.☆51Jul 17, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Chromosome conformation capture resolved near complete genome assembly of broomcorn millet☆11Sep 13, 2018Updated 8 years ago
- A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study☆342May 27, 2026Updated 5 months ago
- ☆13Mar 28, 2021Updated 5 years ago
- An App counts the number of components in an image.☆24Jul 18, 2023Updated 3 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆34Apr 1, 2026Updated 6 months ago
- An R package for generating comparative regional association plots☆17Sep 30, 2025Updated last year
- QTL analysis software for high-dimensional data and complex cross designs☆11Jul 22, 2026Updated 3 months ago