Christensen-Lab-Dartmouth / PyMethylProcess
Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.
☆35Updated 4 years ago
Alternatives and similar repositories for PyMethylProcess:
Users that are interested in PyMethylProcess are comparing it to the libraries listed below
- Classifying tumor types based on Whole Genome Sequencing (WGS) data☆46Updated last year
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated last year
- Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis☆45Updated 4 years ago
- Code for preparing and running the imageCCA method.☆20Updated 7 years ago
- ☆50Updated 2 years ago
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆39Updated last week
- Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)☆38Updated 3 months ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 3 years ago
- ☆19Updated 4 years ago
- jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data☆31Updated 5 years ago
- scRNAseq integration with triplet neural networks☆39Updated 2 years ago
- Code for paper "A deep profile of gene expression across 18 human cancers"☆16Updated last month
- Analysis notebooks for the Covid-19 meta analysis that accompanies the Nature Medicine publication "Single-cell meta-analysis of SARS-CoV…☆24Updated 4 years ago
- Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously☆35Updated last year
- Explore and download data from the recount3 project☆31Updated last month
- Modular framework for deep learning predictions on methylation data.☆51Updated 4 years ago
- DCAP:Integrating multi-omics data with deep learning for predicting cancer prognosis☆21Updated 3 years ago
- Methods for visualization and analysis of spatially-resolved gene expression☆15Updated 2 months ago
- development of network co-localization tool☆14Updated 2 months ago
- GREP: Genome for REPositioning drugs☆37Updated 2 years ago
- The Single-Cell Pathology Landscape of Breast Cancer☆24Updated 5 years ago
- ☆23Updated last year
- ☆51Updated 9 months ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆54Updated 2 months ago
- A framework to infer mutational signatures in cancer over time☆53Updated 5 years ago
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆42Updated last year
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆34Updated 2 years ago
- tumor - cancer cell line alignment. Use it on the depmap portal or install it with pip.☆9Updated last year
- ARCHS4 RNA-seq processing scripts and web server pages.☆54Updated 4 years ago