shwhalen / ml-pitfallsLinks
Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"
☆46Updated 2 years ago
Alternatives and similar repositories for ml-pitfalls
Users that are interested in ml-pitfalls are comparing it to the libraries listed below
Sorting:
- Computational Biology- Spring 2021☆48Updated 4 years ago
- Modelling DNA methylation profiles☆24Updated 5 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆50Updated 2 years ago
- scRNAseq integration with triplet neural networks☆41Updated last week
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 4 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Updated 3 years ago
- Explore and download data from the recount3 project☆37Updated 4 months ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆64Updated last year
- Multi-omics studies are available here☆52Updated 3 years ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 3 years ago
- epigenome analysis to rank transcription factors☆15Updated 6 years ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆66Updated 4 years ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆59Updated 8 months ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 4 years ago
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆19Updated 6 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆35Updated last year
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆34Updated 10 months ago
- GWAS gold standards repository☆40Updated 2 years ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆62Updated 5 years ago
- Deep Feature Interaction Maps (DFIM)☆54Updated 6 years ago
- ☆44Updated last year
- A network-based approach for exon set enrichment☆15Updated 6 months ago
- Data and analysis for the Splatter paper☆29Updated 8 years ago
- High-definition modeling of chromatin + transcriptomics data☆26Updated 9 months ago
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆38Updated 6 years ago
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆24Updated last year
- A study to compare methods for clustering of scRNA-seq data☆44Updated last year
- Scripts for using scanpy☆39Updated 3 months ago
- Explore the cancer relevance of your gene list☆52Updated last month