shwhalen / ml-pitfalls
Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"
☆45Updated last year
Alternatives and similar repositories for ml-pitfalls:
Users that are interested in ml-pitfalls are comparing it to the libraries listed below
- Deep Feature Interaction Maps (DFIM)☆53Updated 5 years ago
- Diverse sampling for single-cell datasets☆16Updated 4 years ago
- Tissue-specific variant effect predictions on splicing☆40Updated last year
- Software for comparing contact maps from HiC, CaptureC and other 3D genome data.☆26Updated 6 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆38Updated 4 months ago
- Data and analysis for the Splatter paper☆28Updated 7 years ago
- Transcription Factor Enrichment Analysis☆34Updated 3 weeks ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 2 months ago
- ☆23Updated 4 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆46Updated 5 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- ☆42Updated 4 months ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Core functionality of the CGAT code☆33Updated 2 months ago
- cfDNA analysis workflow☆21Updated last year
- Single-cell Hi-C data analysis toolbox☆26Updated 3 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆40Updated 2 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Comparison of Hi-C Experiments using Structural Similarity.☆27Updated last year
- Geometry-preserving random sampling☆80Updated 4 months ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Clustering motif models to remove redundancy☆40Updated last year
- Fast motif matching in R☆46Updated last year
- Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.☆56Updated last year
- High-definition modeling of chromatin + transcriptomics data☆22Updated 4 months ago
- Benchmarking long-read RNA-seq analysis tools☆26Updated last month
- Modelling DNA methylation profiles☆22Updated 4 years ago
- Motif Scan and Enrichment Analysis (MoSEA)☆16Updated 4 years ago
- Scripts for using scanpy☆35Updated this week