MaayanLab / biojupies-plugins
User-submitted RNA-seq data analysis tools for BioJupies.
☆19Updated 3 years ago
Alternatives and similar repositories for biojupies-plugins:
Users that are interested in biojupies-plugins are comparing it to the libraries listed below
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- A Python package for gene network analysis☆32Updated 2 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 3 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated last year
- A collection of useful functions for bioinformatics data analysis☆21Updated 8 months ago
- Single cell interactive plotting tools☆23Updated 4 years ago
- devCellPy is a Python package designed for hierarchical multilayered classification of cells based on single-cell RNA-sequencing.☆25Updated last year
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆20Updated last year
- ARCHS4 RNA-seq processing scripts and web server pages.☆54Updated 4 years ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆45Updated 3 weeks ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 8 years ago
- Fast motif matching in R☆46Updated last year
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆49Updated 5 years ago
- Universal RObust Peak Annotator☆15Updated last year
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆16Updated 5 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆49Updated 5 years ago
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆19Updated 5 years ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆22Updated 3 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 3 years ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆24Updated 9 months ago
- scRNAseq integration with triplet neural networks☆40Updated 2 years ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆22Updated this week
- Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)☆10Updated 3 years ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆53Updated 6 months ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆44Updated last year
- An unsupervised transfer learning approach for rare disease transcriptomics☆45Updated 5 years ago
- 📝 [Tutorial] RepSeq data mining basics in R☆10Updated 6 years ago
- Mean Alterations Using Discrete Expression☆14Updated 11 months ago