MaayanLab / biojupies-pluginsLinks
User-submitted RNA-seq data analysis tools for BioJupies.
☆20Updated 2 months ago
Alternatives and similar repositories for biojupies-plugins
Users that are interested in biojupies-plugins are comparing it to the libraries listed below
Sorting:
- 🏺 Exploring novel tumor epitope identification☆36Updated 5 years ago
- Predict mutated T-cell epitopes from sequencing data☆30Updated 7 months ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆65Updated 4 years ago
- 3D hotspot mutation proximity analysis tool☆48Updated 2 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆33Updated 6 months ago
- DRUGZ software☆23Updated 4 years ago
- Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.☆46Updated 7 years ago
- An unsupervised transfer learning approach for rare disease transcriptomics☆45Updated 5 years ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆52Updated 4 months ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 3 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆48Updated 2 years ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆22Updated 2 years ago
- Immunology Informatics - Big Data Analysis in Immunology - Tutorials☆23Updated 8 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 6 years ago
- A Python package for gene network analysis☆32Updated 3 years ago
- MEXPRESS is a data visualization tool designed for the visualization of TCGA expression, DNA methylation and clinical data.☆13Updated 5 years ago
- ☆35Updated 3 years ago
- A collection of useful functions for bioinformatics data analysis☆25Updated 2 months ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆54Updated last year
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- Please consider using/contributing to https://github.com/nf-core/scdownstream☆26Updated last year
- IPAW: a Nextflow workflow for proteogenomics☆28Updated last year
- xOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, …☆33Updated 2 months ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Updated last year
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- ☆22Updated 5 years ago
- R package to analyze large-scale pharmacogenomic datasets.☆71Updated last week