Alternatives and similar repositories for xenaPython

Users that are interested in xenaPython are comparing it to the libraries listed below

• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆49Updated 2 years ago
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆50Updated 6 years ago
• Xinglab / DARTS
  Deep-learning Augmented RNA-seq analysis of Transcript Splicing
  ☆114Updated last year
• openvax / neoantigen-vaccine-pipeline
  Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines
  ☆83Updated 6 months ago
• sebriois / biomart
  Python biomart API
  ☆66Updated 2 years ago
• bhklab / PharmacoDB
  Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.
  ☆46Updated 6 years ago
• Novartis / DRUG-seq
  DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline
  ☆32Updated 4 months ago
• MaayanLab / archs4
  ARCHS4 RNA-seq processing scripts and web server pages.
  ☆58Updated 4 years ago
• PMBio / deepcpg
  Deep neural networks for predicting CpG methylation
  ☆37Updated 8 years ago
• epaull / TieDIE
  Tied Diffusion for Subnetwork Discovery (TieDIE)
  ☆37Updated 3 years ago
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆51Updated 2 months ago
• TaylorResearchLab / scedar
  Single-cell exploratory data analysis for RNA-Seq
  ☆40Updated 4 years ago
• Teichlab / bracer
  BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data
  ☆42Updated 11 months ago
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆84Updated 2 months ago
• urmi-21 / pyrpipe
  Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
  ☆84Updated 4 years ago
• ambj / MuPeXI
  MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.
  ☆51Updated 5 years ago
• umccr / neoantigens
  🏺 Exploring novel tumor epitope identification
  ☆34Updated 4 years ago
• openvax / gtfparse
  Parsing tools for GTF (gene transfer format) files
  ☆121Updated 5 months ago
• SchulzLab / TEPIC
  Annotation of genomic regions using transcription factor binding sites and epigenetic data
  ☆40Updated 3 years ago
• davidnboone / tcga_brca_rnaseq
  jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data
  ☆32Updated 6 years ago
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆56Updated 5 years ago
• broadinstitute / single_cell_portal_core
  Rails/Docker application for the Broad Institute's single cell RNA-seq data portal
  ☆68Updated this week
• krassowski / drug-disease-profile-matching
  Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap
  ☆17Updated 5 years ago
• cstoeckert / iterativeWGCNA
  Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.
  ☆64Updated 4 years ago
• compgenome365 / TCGA-Assembler-2
  TCGA-Assembler 2
  ☆77Updated 7 years ago
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆36Updated 3 years ago
• cssblab / iOmicsPASS
  Data Integration tool utilizing network information for predictive analyses
  ☆16Updated 2 months ago
• shwhalen / targetfinder
  ☆84Updated 4 years ago
• cancer-genomics / delfi_scripts
  ☆73Updated 4 years ago
• NVIDIA-Genomics-Research / AtacWorks
  Deep learning based processing of Atac-seq data
  ☆129Updated 2 years ago