ucscXena / xenaPython
Python API for Xena Hub
☆52Updated last year
Related projects ⓘ
Alternatives and complementary repositories for xenaPython
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆48Updated last year
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆48Updated 5 years ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆110Updated 9 months ago
- ☆69Updated 3 years ago
- Code related to the Celligner manuscript☆43Updated 4 years ago
- ☆60Updated 4 years ago
- bioinformatics plotting and tools☆53Updated 5 months ago
- Scanpy use cases.☆77Updated 4 years ago
- Material for lecture at the EMBL Single Cell Course 2016☆47Updated 8 years ago
- Tools for working with BUS files☆92Updated 2 weeks ago
- A docker image for single-cell analysis☆66Updated 5 months ago
- Course material in notebook format for learning about single cell bioinformatics methods☆100Updated 8 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆40Updated 2 years ago
- A simple pythonic interface to biomart.☆55Updated 4 years ago
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆85Updated 5 years ago
- Single-cell exploratory data analysis for RNA-Seq☆39Updated 3 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆61Updated 3 years ago
- ☆42Updated 6 years ago
- microRNA profiling pipeline☆73Updated 2 years ago
- Repository for Cibersortx☆51Updated 3 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆101Updated 3 months ago
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆42Updated last year
- Classifying tumor types based on Whole Genome Sequencing (WGS) data☆46Updated 11 months ago
- ☆67Updated 6 years ago
- Bioinformatics Workflows☆20Updated 3 years ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆57Updated 11 months ago
- Tutorials, workflows, and convenience scripts for Single Cell Portal☆47Updated 8 months ago
- Python biomart API☆63Updated last year
- ☆46Updated 2 years ago
- Scripts from the Joung et al Nature Protocols 2016 manuscript on knockout and transcriptional activation screening☆47Updated 7 years ago