ucscXena / xenaPythonLinks
Python API for Xena Hub
☆55Updated 2 years ago
Alternatives and similar repositories for xenaPython
Users that are interested in xenaPython are comparing it to the libraries listed below
Sorting:
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Updated 3 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆50Updated 2 years ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆115Updated last year
- Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines☆88Updated 3 months ago
- Deep neural networks for predicting CpG methylation☆37Updated 8 years ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆61Updated 5 years ago
- Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.☆47Updated 7 years ago
- 3D hotspot mutation proximity analysis tool☆50Updated 2 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Updated 2 months ago
- ☆84Updated 4 years ago
- ☆74Updated 4 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆89Updated last month
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Updated 6 years ago
- Python biomart API☆69Updated 2 years ago
- 🏺 Exploring novel tumor epitope identification☆37Updated 5 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆46Updated 2 years ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆46Updated 9 years ago
- Data and analysis for the Splatter paper☆29Updated 8 years ago
- Fast visualization tool for large-scale and high dimensional single-cell data☆77Updated last week
- Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing da…☆51Updated 10 months ago
- R package to analyze large-scale pharmacogenomic datasets.☆72Updated 2 months ago
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- Rails/Docker application for the Broad Institute's single cell RNA-seq data portal☆69Updated last week
- ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser☆80Updated last week
- TCGA-Assembler 2☆77Updated 7 years ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆66Updated 4 years ago
- Modular framework for deep learning predictions on methylation data.☆55Updated 5 years ago
- Processing of single cell RNAseq data for the recovery of TCRs in python☆30Updated 5 years ago