Christensen-Lab-Dartmouth / MethylNetLinks
Modular framework for deep learning predictions on methylation data.
☆55Updated 5 years ago
Alternatives and similar repositories for MethylNet
Users that are interested in MethylNet are comparing it to the libraries listed below
Sorting:
- Classifying tumor types based on Whole Genome Sequencing (WGS) data☆49Updated 2 years ago
- Deep neural networks for predicting CpG methylation☆37Updated 8 years ago
- ☆74Updated 4 years ago
- Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis☆46Updated 5 years ago
- Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.☆36Updated 5 years ago
- ☆10Updated 3 years ago
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆92Updated 10 months ago
- 🏺 Exploring novel tumor epitope identification☆37Updated 5 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆50Updated 2 years ago
- Fast method for inferring cancer clonal population structure from SNV data.☆66Updated last week
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆115Updated last year
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- A toolkit for training deep learning models on genotype, tabular, sequence, image, array and binary data.☆42Updated this week
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆40Updated 4 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆90Updated 2 months ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 3 years ago
- Clinical interpretation of somatic mutations in cancer☆50Updated 10 months ago
- code to run sei and obtain sei and sequence class predictions☆110Updated 3 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆46Updated 2 years ago
- A repository for sharing information on available COVID-19 RNA-Seq datasets☆81Updated 3 years ago
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- ☆22Updated 5 years ago
- Python API for Xena Hub☆55Updated 2 years ago
- ☆87Updated last month
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆58Updated 7 months ago
- In-silico Saturation Mutagenesis implementation with 10x or more speedup for certain architectures.☆22Updated 3 years ago
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated last year
- ☆22Updated 8 years ago
- Deep learning based processing of Atac-seq data☆131Updated 2 years ago