Alternatives and similar repositories for MethylNet

Users that are interested in MethylNet are comparing it to the libraries listed below

• PMBio / deepcpg
  Deep neural networks for predicting CpG methylation
  ☆37Updated 8 years ago
• ICGC-TCGA-PanCancer / TumorType-WGS
  Classifying tumor types based on Whole Genome Sequencing (WGS) data
  ☆49Updated 2 years ago
• Christensen-Lab-Dartmouth / PyMethylProcess
  Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.
  ☆36Updated 5 years ago
• kundajelab / alzheimers_parkinsons
  Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis
  ☆46Updated 5 years ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆50Updated 2 years ago
• bernardo-de-almeida / DeepSTARR
  Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…
  ☆71Updated 2 years ago
• jzhoulab / orca
  sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale
  ☆92Updated 9 months ago
• umccr / neoantigens
  🏺 Exploring novel tumor epitope identification
  ☆37Updated 5 years ago
• LieberInstitute / INTERACT
  ☆10Updated 3 years ago
• kundajelab / ChromDragoNN
  Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…
  ☆44Updated 4 years ago
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆89Updated last month
• ucscXena / xenaPython
  Python API for Xena Hub
  ☆55Updated 2 years ago
• zhangyan32 / HiCPlus
  ☆32Updated 6 years ago
• ylab-hi / ScanNeo
  A pipeline for identifying indel derived neoantigens using RNA-Seq data
  ☆30Updated 3 years ago
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆55Updated 5 years ago
• cancer-genomics / delfi_scripts
  ☆74Updated 4 years ago
• Xinglab / DARTS
  Deep-learning Augmented RNA-seq analysis of Transcript Splicing
  ☆115Updated last year
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• urmi-21 / pyrpipe
  Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
  ☆84Updated 4 years ago
• TaylorResearchLab / scedar
  Single-cell exploratory data analysis for RNA-Seq
  ☆40Updated 4 years ago
• Oshlack / splatter-paper
  Data and analysis for the Splatter paper
  ☆29Updated 8 years ago
• smaslova / AI-TAC
  ☆27Updated 2 years ago
• p-koo / creme-nn
  https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2
  ☆32Updated 11 months ago
• FunctionLab / sei-framework
  code to run sei and obtain sei and sequence class predictions
  ☆109Updated 3 years ago
• Illumina / PromoterAI
  ☆83Updated last month
• Roth-Lab / pyclone-vi
  Fast method for inferring cancer clonal population structure from SNV data.
  ☆66Updated 3 months ago
• FunctionLab / sei-manuscript
  Code for reproducing the Sei manuscript results
  ☆17Updated 3 years ago
• kundajelab / fastISM
  In-silico Saturation Mutagenesis implementation with 10x or more speedup for certain architectures.
  ☆22Updated 3 years ago
• alexfields / ORF-RATER
  Regression-based annotation of protein-coding sequences from ribosome profiling data
  ☆32Updated 5 years ago
• arnor-sigurdsson / EIR
  A toolkit for training deep learning models on genotype, tabular, sequence, image, array and binary data.
  ☆42Updated this week