Alternatives and similar repositories for MethylNet

Users that are interested in MethylNet are comparing it to the libraries listed below

• ICGC-TCGA-PanCancer / TumorType-WGS
  Classifying tumor types based on Whole Genome Sequencing (WGS) data
  ☆49Updated 2 years ago
• Christensen-Lab-Dartmouth / PyMethylProcess
  Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.
  ☆36Updated 5 years ago
• PMBio / deepcpg
  Deep neural networks for predicting CpG methylation
  ☆37Updated 8 years ago
• kundajelab / alzheimers_parkinsons
  Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis
  ☆46Updated 5 years ago
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆88Updated last month
• jzhoulab / orca
  sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale
  ☆92Updated 9 months ago
• arnor-sigurdsson / EIR
  A toolkit for training deep learning models on genotype, tabular, sequence, image, array and binary data.
  ☆42Updated 3 weeks ago
• cancer-genomics / delfi_scripts
  ☆74Updated 4 years ago
• ucscXena / xenaPython
  Python API for Xena Hub
  ☆54Updated 2 years ago
• WGLab / CancerVar
  Clinical interpretation of somatic mutations in cancer
  ☆50Updated 9 months ago
• compgenome365 / TCGA-Assembler-2
  TCGA-Assembler 2
  ☆77Updated 7 years ago
• Xinglab / DARTS
  Deep-learning Augmented RNA-seq analysis of Transcript Splicing
  ☆115Updated last year
• kundajelab / ChromDragoNN
  Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…
  ☆44Updated 4 years ago
• ncomms-20-10056-t / ncomms-20-10056-t
  ☆22Updated 5 years ago
• NVIDIA-Genomics-Research / AtacWorks
  Deep learning based processing of Atac-seq data
  ☆131Updated 2 years ago
• umccr / neoantigens
  🏺 Exploring novel tumor epitope identification
  ☆37Updated 5 years ago
• Roth-Lab / pyclone-vi
  Fast method for inferring cancer clonal population structure from SNV data.
  ☆62Updated 2 months ago
• adoebley / Griffin
  A flexible framework for nucleosome profiling of cell-free DNA
  ☆27Updated 2 years ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆49Updated 2 years ago
• ylab-hi / ScanNeo
  A pipeline for identifying indel derived neoantigens using RNA-Seq data
  ☆30Updated 3 years ago
• LieberInstitute / INTERACT
  ☆10Updated 3 years ago
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆55Updated 5 years ago
• Illumina / PromoterAI
  ☆81Updated last week
• ohlerlab / DeepRiPe
  ☆24Updated last year
• zhangyan32 / HiCPlus
  ☆31Updated 6 years ago
• TaylorResearchLab / scedar
  Single-cell exploratory data analysis for RNA-Seq
  ☆40Updated 4 years ago
• greenelab / pancancer
  Building classifiers using cancer transcriptomes across 33 different cancer-types
  ☆121Updated 6 years ago
• Hughes-Genome-Group / deepC
  A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence
  ☆33Updated last year
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆55Updated 6 months ago
• Oshlack / splatter-paper
  Data and analysis for the Splatter paper
  ☆29Updated 7 years ago