arnor-sigurdsson / EIR
A toolkit for training deep learning models on genotype, tabular, sequence, image, array and binary data.
☆26Updated this week
Related projects ⓘ
Alternatives and complementary repositories for EIR
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆22Updated 3 weeks ago
- Phenome Exome Association and Correlation Of Key phenotypes☆24Updated 3 years ago
- GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comp…☆24Updated last week
- ☆42Updated 3 weeks ago
- A framework to infer mutational signatures in cancer over time☆53Updated 5 years ago
- mantis-ml: Stochastic semi-supervised learning to prioritise genes from high throughput genomic screens☆28Updated 9 months ago
- Clinical interpretation of somatic mutations in cancer☆42Updated 2 years ago
- Explore the cancer relevance of your gene list☆49Updated 2 months ago
- package for the causal TWAS project☆38Updated this week
- ☆35Updated this week
- Explore and download data from the recount3 project☆31Updated 6 months ago
- List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS☆28Updated last week
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆38Updated 2 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆29Updated 2 years ago
- ☆33Updated 2 months ago
- ☆24Updated 4 years ago
- Source code of FUMA GWAS web application☆53Updated last year
- Cross-population polygenic prediction☆69Updated this week
- A flexible framework for nucleosome profiling of cell-free DNA☆26Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month
- ☆37Updated 4 years ago
- ☆11Updated last year
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated last year
- Proteome-Wide Association Study☆42Updated 3 years ago
- MutSig2CV from Lawrence et al. 2014☆30Updated 4 years ago
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆32Updated 4 months ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆31Updated last month
- Accompanying analysis code for the FRASER manuscript☆26Updated 4 years ago
- ☆40Updated 6 years ago
- ☆64Updated 2 years ago