arnor-sigurdsson / EIRLinks
A toolkit for training deep learning models on genotype, tabular, sequence, image, array and binary data.
☆38Updated last week
Alternatives and similar repositories for EIR
Users that are interested in EIR are comparing it to the libraries listed below
Sorting:
- This repository houses scripts for training genetic scores of omic traits in INTERVAL☆25Updated 2 years ago
- Code for paper "A deep profile of gene expression across 18 human cancers"☆25Updated 6 months ago
- Python module for genetic analyses☆14Updated 2 months ago
- Phenome Exome Association and Correlation Of Key phenotypes☆27Updated 3 years ago
- ☆39Updated last week
- Homologous recombination deficiency in TCGA PanCancer Atlas☆27Updated 4 years ago
- MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…☆43Updated 4 months ago
- ☆79Updated 3 years ago
- ☆48Updated last month
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆23Updated 5 months ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.☆36Updated 5 years ago
- Cross-population polygenic prediction☆85Updated 7 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…☆17Updated 7 months ago
- Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis☆46Updated 4 years ago
- An R package for phenotype generation and association testing for phenome wide associations studies (PheWAS)☆14Updated 11 months ago
- Clinical interpretation of somatic mutations in cancer☆46Updated 4 months ago
- ☆17Updated 11 months ago
- Source code of FUMA GWAS web application☆57Updated last year
- Configs and descriptions of circos plots created on FUMA web application☆15Updated 7 years ago
- ☆25Updated 2 years ago
- FLAMES: Accurate gene prioritization in GWAS loci☆37Updated 3 months ago
- Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.☆24Updated 2 months ago
- GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comp…☆26Updated last month
- Easily download publicly available GWAS summary statistics.☆76Updated last year
- causal TWAS (cTWAS)☆43Updated last week
- Analyses conducting GWAS across the UKBB diverse superpopulations☆50Updated last month
- ☆26Updated 2 weeks ago
- This repository includes the code used in our multiomics BMI study.☆17Updated last year