sheffield-bioinformatics-core / periscopeView external linksLinks
A tool to quantify sub-genomic RNA (sgRNA) expression in SARS-CoV-2 artic network amplicon nanopore sequencing data.
☆17May 30, 2022Updated 3 years ago
Alternatives and similar repositories for periscope
Users that are interested in periscope are comparing it to the libraries listed below
Sorting:
- This Is Indian Country - Spring 2018 Instance☆12Apr 30, 2018Updated 7 years ago
- Haplotype-based somatic genome simulator☆10May 19, 2017Updated 8 years ago
- Sequences from HIV Easily Reconstructed☆28May 3, 2024Updated last year
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Jan 18, 2019Updated 7 years ago
- Fast and scalable nanopore adaptive sampling☆35Jun 6, 2023Updated 2 years ago
- NuDup -- Marks/removes duplicate molecules based on the molecular tagging technology used in Tecan products.☆14Nov 19, 2019Updated 6 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Mar 26, 2020Updated 5 years ago
- A tool for de novo clustering of long transcriptomic reads☆15Oct 2, 2022Updated 3 years ago
- Local Lineage and Monophyly Assessment☆16Aug 5, 2021Updated 4 years ago
- Compressive Read-mapping Accelerator☆14Sep 7, 2016Updated 9 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Apr 9, 2019Updated 6 years ago
- Python bindings to spoa☆22Dec 3, 2025Updated 2 months ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Oct 30, 2023Updated 2 years ago
- A comprehensive pipeline to analyze and visualize structural variants☆20Jan 28, 2020Updated 6 years ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆22Feb 10, 2019Updated 7 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Oct 22, 2019Updated 6 years ago
- slow5lib is a software library for reading & writing SLOW5 files.☆47Jan 28, 2026Updated 2 weeks ago
- Taxon Information Query - fast, offline querying of NCBI Taxonomy and related data☆59Feb 8, 2026Updated last week
- Flip-flop basecaller for Oxford Nanopore reads☆99Jan 13, 2022Updated 4 years ago
- seminar series on data science, reproducible science and open source by @maxheld83☆15Apr 30, 2020Updated 5 years ago
- Simulations work for the Underactuated Lightweight Tensegrity Robotic Assistive Spine. This repository includes code for the kinematics, …☆12Jan 11, 2019Updated 7 years ago
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- Indel-aware consensus for aligned BAM☆21Aug 16, 2025Updated 5 months ago
- Library of sketching functions used by PopPUNK☆31Mar 31, 2025Updated 10 months ago
- Biological Graphic tool in Python☆34May 14, 2020Updated 5 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Jan 26, 2022Updated 4 years ago
- An R Package for Multiplex PCR Primer Design and Analysis☆30Jul 12, 2025Updated 7 months ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Dec 26, 2023Updated 2 years ago
- Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop☆72Jul 31, 2025Updated 6 months ago
- ☆74Jan 23, 2024Updated 2 years ago
- Naming avoiding ambiguity automatically assigning valid identifiers☆32Mar 18, 2021Updated 4 years ago
- Python client library for Guppy☆32Aug 15, 2022Updated 3 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆33Jul 2, 2024Updated last year
- BigWig manpulation tools using libBigWig and htslib☆30Aug 8, 2024Updated last year
- Code base for Orpheus☆10Jun 1, 2022Updated 3 years ago
- Moved here: https://gitlab.com/librehealth/incubating-projects/mhbs/mHBS-trainer☆10Apr 15, 2020Updated 5 years ago
- Wavefront alignment algorithm (WFA): Fast and exact gap-affine pairwise alignment☆199Mar 8, 2022Updated 3 years ago
- A PyTorch Basecaller for Oxford Nanopore Reads☆428Jan 14, 2026Updated last month
- ☆38Jan 12, 2026Updated last month