sheffield-bioinformatics-core / periscopeLinks
A tool to quantify sub-genomic RNA (sgRNA) expression in SARS-CoV-2 artic network amplicon nanopore sequencing data.
☆17Updated 3 years ago
Alternatives and similar repositories for periscope
Users that are interested in periscope are comparing it to the libraries listed below
Sorting:
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆69Updated 3 years ago
- NovoGraph: building whole genome graphs from long-read-based de novo assemblies☆45Updated 4 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 8 months ago
- Genome inference from a population reference graph☆97Updated 3 months ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated last year
- **DEFUNCT** dada2-based Nextflow pipeline for multiple amplicon data. See website for up-to-date version☆20Updated 5 years ago
- Dynamic, adaptive sampling during nanopore sequencing☆34Updated 2 months ago
- A fast tool for hybrid genome assembly of long and short reads☆78Updated 5 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆85Updated 7 years ago
- Taxon Information Query - fast, offline querying of NCBI Taxonomy and related data☆59Updated 9 months ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆91Updated last month
- Estimating k-mer coverage histogram of genomics data☆77Updated last year
- ☆37Updated 3 months ago
- Interactive visualization of assembly graphs☆82Updated 3 years ago
- ⛓ Correct misassemblies using linked AND long reads☆60Updated last year
- Tools for the analysis of structural variation in genomes☆80Updated last year
- A scalable bacterial genome assembly, annotation and analysis pipeline☆74Updated last year
- ☆13Updated 5 years ago
- Database-Integrated Genome Screening (DIGS) tool. Explore the dark genome using BLAST and a relational database.☆11Updated 10 months ago
- Small collection of tools for performing quality control on coronavirus sequencing data and genomes☆48Updated last year
- De novo genome assembly and multisample variant calling☆112Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆44Updated this week
- Catalog of genomic indexes freely available from public clouds☆61Updated this week
- WDL workflows for variant calling and assembly using ONT☆35Updated last month
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- Data from the Human PanGenomics Project☆60Updated 4 years ago
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆67Updated 8 months ago