hivdb / codfreq
FASTQ-to-CodFreq pipeline for HIV-1 and SARS-CoV-2
☆14Updated last year
Alternatives and similar repositories for codfreq:
Users that are interested in codfreq are comparing it to the libraries listed below
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆34Updated 9 months ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆36Updated 2 months ago
- ☆24Updated last week
- MIRA sequence assembler☆29Updated 3 months ago
- Influenza genome analysis Nextflow workflow☆26Updated 2 weeks ago
- SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data☆20Updated 3 years ago
- 🍶 Genome assembly with short sequence reads☆25Updated last year
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Find Unique genomic Regions☆29Updated 3 weeks ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 2 years ago
- read cloud assembler☆35Updated 6 years ago
- ☆26Updated 3 years ago
- ☆34Updated last year
- A tutorial on structural variant calling for short read sequencing data☆32Updated 6 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Ultra-efficient taxonomic mapping of NGS data☆51Updated 4 years ago
- Fast and scalable nanopore adaptive sampling☆33Updated last year
- ☆28Updated 2 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Updated 6 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- Trimming tool for Oxford Nanopore sequence data☆21Updated 3 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- A simple tool to calculate reads number and total base count in FASTQ file☆21Updated 6 years ago
- Automatically design multiplex PCR primer pairs for diverse templates☆26Updated 11 months ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆15Updated 7 years ago
- de novo virus assembler of Illumina paired reads☆55Updated 3 years ago