hivdb / codfreqLinks
FASTQ-to-CodFreq pipeline for HIV-1 and SARS-CoV-2
☆14Updated 3 weeks ago
Alternatives and similar repositories for codfreq
Users that are interested in codfreq are comparing it to the libraries listed below
Sorting:
- ☆24Updated 4 months ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆75Updated last year
- Reference-guided multiple sequence alignment of viral genomes☆71Updated 2 months ago
- A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats☆30Updated last year
- 🍶 Genome assembly with short sequence reads☆25Updated last year
- The Zika bioinformatics pipeline☆35Updated 5 years ago
- perSVade: personalized Structural Variation detection☆40Updated last month
- ☆45Updated 8 years ago
- A tutorial on structural variant calling for short read sequencing data☆39Updated 10 months ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆34Updated last year
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 3 years ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated 3 weeks ago
- collection of bioinformatic scripts☆31Updated last year
- Evolutionary Transcriptomics with R☆45Updated last week
- POSTRE: Prediction Of STRuctural variant Effects☆27Updated 6 months ago
- Protein Alignment and Detection Interface☆61Updated last year
- PHAST☆74Updated this week
- HMM-HDP models for MinION signal alignments☆46Updated 8 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Scripts to run several protocols to process and analyze Next-Generation Sequencing data☆17Updated 2 years ago
- ☆29Updated 4 years ago
- My bioinfo toolbox☆50Updated 6 months ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data☆20Updated 3 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- Scripts for implementing read until and other examples.☆32Updated 5 years ago
- Mutation tracker for microbial genomes☆15Updated 4 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 3 years ago