PGPg_finder is a command-line tool that offers different workflows for genome and metagenome annotation of Plant-Growth Promotion Genes. It's designed to be flexible and easy to use pipeline, with several pre-configured workflows to choose from based on the tools and steps you need.
☆32Jan 20, 2026Updated 6 months ago
Alternatives and similar repositories for PGPg_finder
Users that are interested in PGPg_finder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆53Jun 26, 2026Updated last month
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆40Jul 20, 2026Updated last week
- Viroid-like circRNA discovery and analysis suite☆19Nov 11, 2023Updated 2 years ago
- 16S pipeline using qiime2 created with snakemake☆12Jul 13, 2026Updated 2 weeks ago
- ☆51May 29, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A deep learning approach that leverages language processing neural network model to accurately identify known BGCs and extrapolate novel …☆27Jan 9, 2026Updated 6 months ago
- A tool for agile functional analysis of shotgun metagenomic data☆24Jun 4, 2026Updated last month
- ☆11Mar 5, 2025Updated last year
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆30Jul 21, 2026Updated last week
- Pipeline to design taxon-specific primes in defined bacterial communities.☆26Jan 28, 2025Updated last year
- Alignment-free Phylogenetic Placement using filtered SPAced word Matches☆13Jul 19, 2023Updated 3 years ago
- Automated processing of Sanger sequencing data, taxonomic profiling, and generation of microbial strain libraries☆18Jan 4, 2026Updated 6 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆39Dec 20, 2024Updated last year
- A tool for scanning FASTA protein sequences against a library of Pfam HMMs☆28Aug 23, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆35Jun 26, 2025Updated last year
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆46Jun 1, 2026Updated last month
- 🍄 Qiime2 ITS classifiers for the UNITE database☆52May 18, 2026Updated 2 months ago
- Build a partitioned pangenome graph from microbial genomes☆307Jul 21, 2026Updated last week
- Python package simulating artificial selection on microbial communities☆15Aug 15, 2023Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆234Updated this week
- Small utility script to submit genomes to PHASTER for phage detection☆26Oct 21, 2021Updated 4 years ago
- DIAMOND online documentation☆10Sep 2, 2020Updated 5 years ago
- MAG Circularization Method☆33Nov 4, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆14Jul 26, 2024Updated 2 years ago
- Bioinformatics scripts☆14Dec 23, 2024Updated last year
- dada2 formatted nifH database☆13May 17, 2024Updated 2 years ago
- R package for joint species distribution models☆14Nov 3, 2025Updated 8 months ago
- 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo…☆43Jul 19, 2021Updated 5 years ago
- gNOMO2 allows integrated multi-omics analyses of microbiomes☆15Aug 7, 2024Updated last year
- An ultra-fast and accurate tool for KEGG Orthology (KO) assignment, powered by deep learning.☆19Jun 11, 2026Updated last month
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆21Jul 22, 2026Updated last week
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- PhaTYP: Predicting lifestyle for bacteriophages using BERT☆19Nov 6, 2024Updated last year
- A bacterial GWAS pipeline written in Nextflow that uses Pyseer; Part III Project for Systems Biology at the University of Cambridge☆24Jan 20, 2026Updated 6 months ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- t-distributed stochastic neighbor embedding for microbiota data☆12May 12, 2019Updated 7 years ago
- Powerful and robust non-parametric association testing for microbiome data via a zero-inflated quantile approach☆12Mar 21, 2024Updated 2 years ago
- ☆13Jul 17, 2026Updated last week
- An R package containing the functions for the Open Bodem Index (OBI)☆14Jul 2, 2026Updated 3 weeks ago