tpellegrinetti / PGPg_finderLinks
PGPg Finder is a command-line tool that offers different workflows for genome and metagenome annotation of Plant-Growth Promotion Genes. It's designed to be flexible and easy to use pipeline, with several pre-configured workflows to choose from based on the tools and steps you need.
☆27Updated 3 weeks ago
Alternatives and similar repositories for PGPg_finder
Users that are interested in PGPg_finder are comparing it to the libraries listed below
Sorting:
- Metagenomics-related extended functionalities to samtools☆22Updated 2 years ago
- ☆50Updated last month
- CLI tool to annotate genes with KOfam☆87Updated 2 years ago
- viralVerify: viral contig verification tool☆73Updated 4 years ago
- ☆42Updated 7 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated last month
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆40Updated 3 months ago
- ☆81Updated last month
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated 2 weeks ago
- Unified Human Gut Virome Catalog☆41Updated 2 months ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Updated 2 years ago
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆44Updated last year
- Sparse Cooccurence Network Investigation for Compositional data☆25Updated last year
- ARG normalization by mapping to the ARO ontology.☆62Updated 5 months ago
- Pipeline for major biological analyses.☆36Updated 3 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆89Updated last year
- Convert GTDB taxonomy to NCBI taxdump format☆73Updated 2 years ago
- Genome-informed, trait-based dynamic energy budget modeling of microbes with ML analysis of emergent strategies☆15Updated last month
- Binning Virus Genomes from Metagenomes☆69Updated 3 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 5 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆57Updated 8 months ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 5 months ago
- ☆45Updated 2 years ago
- An R package designed for drawing gene arrow maps☆95Updated 3 months ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆31Updated 2 years ago
- ☆32Updated last year
- BEAV: Bacterial Element Annotation reVamped☆73Updated 5 months ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆65Updated 6 years ago