PGPg_finder is a command-line tool that offers different workflows for genome and metagenome annotation of Plant-Growth Promotion Genes. It's designed to be flexible and easy to use pipeline, with several pre-configured workflows to choose from based on the tools and steps you need.
☆32Jan 20, 2026Updated 5 months ago
Alternatives and similar repositories for PGPg_finder
Users that are interested in PGPg_finder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Viroid-like circRNA discovery and analysis suite☆19Nov 11, 2023Updated 2 years ago
- A deep learning approach that leverages language processing neural network model to accurately identify known BGCs and extrapolate novel …☆26Jan 9, 2026Updated 6 months ago
- Alignment-free Phylogenetic Placement using filtered SPAced word Matches☆13Jul 19, 2023Updated 2 years ago
- ☆51Jun 26, 2026Updated last week
- ☆51May 29, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Genome-informed, trait-based dynamic energy budget modeling of microbes with ML analysis of emergent strategies☆19Feb 18, 2026Updated 4 months ago
- Small utility script to submit genomes to PHASTER for phage detection☆26Oct 21, 2021Updated 4 years ago
- DIAMOND online documentation☆10Sep 2, 2020Updated 5 years ago
- ☆14Jul 26, 2024Updated last year
- Bioinformatics scripts☆14Dec 23, 2024Updated last year
- dada2 formatted nifH database☆13May 17, 2024Updated 2 years ago
- t-distributed stochastic neighbor embedding for microbiota data☆12May 12, 2019Updated 7 years ago
- ☆13Jun 18, 2026Updated 3 weeks ago
- Build a partitioned pangenome graph from microbial genomes☆305Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- COmpositional Zero-Inflated Network Estimation☆11Nov 20, 2023Updated 2 years ago
- Python package simulating artificial selection on microbial communities☆15Aug 15, 2023Updated 2 years ago
- 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo…☆41Jul 19, 2021Updated 4 years ago
- ☆19Nov 7, 2025Updated 8 months ago
- ☆22Jun 29, 2026Updated last week
- ☆27Jan 30, 2025Updated last year
- Powerful and robust non-parametric association testing for microbiome data via a zero-inflated quantile approach☆12Mar 21, 2024Updated 2 years ago
- MasterPDFEditor 4 in AppImage☆28May 27, 2026Updated last month
- Sparse Cooccurence Network Investigation for Compositional data☆25Feb 1, 2026Updated 5 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 3 years ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆108Jun 25, 2023Updated 3 years ago
- An R package containing the functions for the Open Bodem Index (OBI)☆14Jul 2, 2026Updated last week
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆39Dec 20, 2024Updated last year
- A shiny application to visualize MCscan result☆37Jun 26, 2026Updated last week
- Connect Siemens S7 to Mqtt with Homeassistant discovery support☆24Jun 27, 2026Updated last week
- R package for joint species distribution models☆14Nov 3, 2025Updated 8 months ago
- Microbiome Analysis Plotting and Visualization☆12Jun 15, 2026Updated 3 weeks ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Dec 16, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- [Archived] SnakeMake pipeline to run BlobTools on public assemblies☆11Jul 3, 2023Updated 3 years ago
- MUSiCC: A marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome☆18Nov 7, 2019Updated 6 years ago
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆37Mar 24, 2026Updated 3 months ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆18Nov 24, 2025Updated 7 months ago
- A tool for agile functional analysis of shotgun metagenomic data☆24Jun 4, 2026Updated last month
- Spatio-temporal joint species distribution modeling using community-level basis functions☆15May 18, 2026Updated last month
- Calculate the dn/ds (also pn and ps) value of cds☆14Jul 11, 2020Updated 5 years ago