tpellegrinetti / PGPg_finderLinks
PGPg Finder is a command-line tool that offers different workflows for genome and metagenome annotation of Plant-Growth Promotion Genes. It's designed to be flexible and easy to use pipeline, with several pre-configured workflows to choose from based on the tools and steps you need.
☆26Updated 5 months ago
Alternatives and similar repositories for PGPg_finder
Users that are interested in PGPg_finder are comparing it to the libraries listed below
Sorting:
- ☆41Updated 5 months ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated last month
- Metagenomics-related extended functionalities to samtools☆22Updated 2 years ago
- CLI tool to annotate genes with KOfam☆85Updated 2 years ago
- viralVerify: viral contig verification tool☆72Updated 4 years ago
- ARG normalization by mapping to the ARO ontology.☆59Updated 3 months ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆25Updated last year
- ☆80Updated last week
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 6 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆67Updated last week
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆65Updated last month
- A Port of SparCC by Yonatan Friedman to Python3☆16Updated 5 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆74Updated 6 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆92Updated 6 months ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆61Updated 6 years ago
- ☆45Updated 2 years ago
- Convert GTDB taxonomy to NCBI taxdump format☆72Updated 2 years ago
- Binning Virus Genomes from Metagenomes☆66Updated 3 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆38Updated last month
- Bioinformatic Tools for study Evolution of metabolic diversity☆36Updated last year
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆82Updated 10 months ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆49Updated 11 months ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆43Updated 2 years ago
- BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a f…☆37Updated 6 years ago
- ☆59Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 months ago