PGPg_finder is a command-line tool that offers different workflows for genome and metagenome annotation of Plant-Growth Promotion Genes. It's designed to be flexible and easy to use pipeline, with several pre-configured workflows to choose from based on the tools and steps you need.
☆31Jan 20, 2026Updated 3 months ago
Alternatives and similar repositories for PGPg_finder
Users that are interested in PGPg_finder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Viroid-like circRNA discovery and analysis suite☆19Nov 11, 2023Updated 2 years ago
- A deep learning approach that leverages language processing neural network model to accurately identify known BGCs and extrapolate novel …☆26Jan 9, 2026Updated 4 months ago
- Alignment-free Phylogenetic Placement using filtered SPAced word Matches☆12Jul 19, 2023Updated 2 years ago
- ☆51Apr 17, 2026Updated 3 weeks ago
- ☆50Mar 13, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Genome-informed, trait-based dynamic energy budget modeling of microbes with ML analysis of emergent strategies☆19Feb 18, 2026Updated 2 months ago
- Small utility script to submit genomes to PHASTER for phage detection☆26Oct 21, 2021Updated 4 years ago
- ☆14Jul 26, 2024Updated last year
- DIAMOND online documentation☆10Sep 2, 2020Updated 5 years ago
- Bioinformatics scripts☆14Dec 23, 2024Updated last year
- dada2 formatted nifH database☆13May 17, 2024Updated last year
- Python package simulating artificial selection on microbial communities☆14Aug 15, 2023Updated 2 years ago
- t-distributed stochastic neighbor embedding for microbiota data☆12May 12, 2019Updated 6 years ago
- ☆13Apr 30, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Build a partitioned pangenome graph from microbial genomes☆299Apr 20, 2026Updated 2 weeks ago
- COmpositional Zero-Inflated Network Estimation☆11Nov 20, 2023Updated 2 years ago
- 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo…☆39Jul 19, 2021Updated 4 years ago
- ☆18Nov 7, 2025Updated 6 months ago
- ☆22Nov 12, 2025Updated 5 months ago
- MasterPDFEditor 4 in AppImage☆23Mar 31, 2026Updated last month
- ☆27Jan 30, 2025Updated last year
- Powerful and robust non-parametric association testing for microbiome data via a zero-inflated quantile approach☆12Mar 21, 2024Updated 2 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆25Feb 1, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆30Jul 3, 2023Updated 2 years ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆105Jun 25, 2023Updated 2 years ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆38Dec 20, 2024Updated last year
- An R package containing the functions for the Open Bodem Index (OBI)☆14Mar 24, 2026Updated last month
- A shiny application to visualize MCscan result☆37Mar 8, 2026Updated 2 months ago
- Connect Siemens S7 to Mqtt with Homeassistant discovery support☆24Dec 11, 2022Updated 3 years ago
- R package for joint species distribution models☆14Nov 3, 2025Updated 6 months ago
- Microbiome Analysis Plotting and Visualization☆12Mar 23, 2026Updated last month
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Dec 16, 2022Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- [Archived] SnakeMake pipeline to run BlobTools on public assemblies☆11Jul 3, 2023Updated 2 years ago
- MUSiCC: A marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome☆16Nov 7, 2019Updated 6 years ago
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆37Mar 24, 2026Updated last month
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆18Nov 24, 2025Updated 5 months ago
- A tool for agile functional analysis of shotgun metagenomic data☆24Sep 15, 2024Updated last year
- Spatio-temporal joint species distribution modeling using community-level basis functions☆14Apr 27, 2026Updated last week
- Calculate the dn/ds (also pn and ps) value of cds☆14Jul 11, 2020Updated 5 years ago