CellProfiler / notebooksLinks
Jupyter notebooks for CellProfiler and friends
☆13Updated 7 years ago
Alternatives and similar repositories for notebooks
Users that are interested in notebooks are comparing it to the libraries listed below
Sorting:
- Piecewise alignment for layers of mosaics☆24Updated 2 weeks ago
- ☆23Updated 2 years ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆76Updated 8 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 4 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆54Updated 3 weeks ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆21Updated 3 years ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Updated 10 months ago
- ☆62Updated 3 months ago
- Cloud-based data annotation tools for biological images☆81Updated last year
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- ☆25Updated 4 years ago
- Learn morphological states of dynamic cells☆12Updated 2 years ago
- ☆32Updated 2 years ago
- Integrated pipeline for multiplexed image analysis☆90Updated 2 months ago
- ☆33Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated last year
- RAnking Markers for CEll Segmentation☆11Updated 3 years ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆56Updated last year
- CODEX data processing code☆12Updated last week
- Predicting Cell Health with Morphological Profiles☆37Updated 3 years ago
- Community-contributed and experimental CellProfiler modules.☆65Updated 2 weeks ago
- Spatial Single-Cell Analysis Toolkit☆91Updated 3 weeks ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Image stitching☆12Updated 6 years ago
- Find profile pairs and compute metrics between them.☆12Updated 2 months ago
- CellProfiler tutorial pipelines and images☆93Updated 3 weeks ago
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆51Updated 11 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 8 months ago
- Multiple-choice microscopy pipeline☆131Updated 3 months ago
- QuPath extension for Cellsparse☆18Updated last month