CellProfiler / notebooksLinks
Jupyter notebooks for CellProfiler and friends
☆14Updated 7 years ago
Alternatives and similar repositories for notebooks
Users that are interested in notebooks are comparing it to the libraries listed below
Sorting:
- Self-supervised models for encoding protein localization patterns from microscopy images☆80Updated 6 months ago
- ☆24Updated 2 years ago
- Find profile pairs and compute retrieval metrics between them.☆21Updated last week
- ☆24Updated 5 years ago
- Morphological profiling using deep learning☆123Updated last year
- Community-contributed and experimental CellProfiler modules.☆72Updated 3 weeks ago
- Cloud-based data annotation tools for biological images☆84Updated last year
- multimodal whole slide image registration in a graph structure☆100Updated last year
- SplineDist: Automated Cell Segmentation with Spline Curves☆70Updated last year
- Lazily load multiscale whole-slide images with openslide and dask☆34Updated 3 years ago
- Image stitching☆12Updated 7 years ago
- Python package for processing image-based profiling data☆134Updated this week
- Morphological features from images and masks made easy.☆42Updated last week
- ☆71Updated 11 months ago
- Piecewise alignment for layers of mosaics☆35Updated 5 months ago
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆60Updated last year
- AICS Segmentation (One-Way) Mirror☆45Updated 5 years ago
- ☆37Updated 2 years ago
- ☆32Updated 6 months ago
- AICS ML Segmentation (One-Way) Mirror☆27Updated 4 years ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆25Updated last year
- A browser-based deep learning tool for image annotation, segmentation, classification, and measurement.☆38Updated 2 months ago
- Label Free Prediction of Cell Painting from Brightfield Images☆33Updated 3 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated 2 months ago
- Multiple-choice microscopy pipeline☆145Updated last week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 3 months ago
- CellProfiler tutorial pipelines and images☆98Updated last week
- Predicting Cell Health with Morphological Profiles☆39Updated 4 years ago
- Methods for Image-Based Cell Profiling☆51Updated last year
- Jupyter notebooks for deep lineage analysis of single-cell heterogeneity and cell cycling duration heritability.☆30Updated 5 years ago