CellProfiler / notebooksLinks
Jupyter notebooks for CellProfiler and friends
☆14Updated 7 years ago
Alternatives and similar repositories for notebooks
Users that are interested in notebooks are comparing it to the libraries listed below
Sorting:
- Self-supervised models for encoding protein localization patterns from microscopy images☆79Updated 4 months ago
- Cloud-based data annotation tools for biological images☆83Updated last year
- Morphological profiling using deep learning☆124Updated last year
- ☆24Updated 2 years ago
- ☆24Updated 5 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 5 years ago
- Morphological features from images and masks made easy.☆38Updated 2 months ago
- ☆32Updated 4 months ago
- multimodal whole slide image registration in a graph structure☆97Updated last year
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Updated 5 years ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆26Updated last year
- AICS ML Segmentation (One-Way) Mirror☆27Updated 4 years ago
- Community-contributed and experimental CellProfiler modules.☆72Updated last week
- Find profile pairs and compute retrieval metrics between them.☆21Updated 3 weeks ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆22Updated 4 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated 3 weeks ago
- Read and write life sciences file formats☆142Updated 6 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Updated 2 months ago
- ☆68Updated 10 months ago
- CellProfiler tutorial pipelines and images☆98Updated 2 months ago
- Piecewise alignment for layers of mosaics☆29Updated 3 months ago
- computer vision models for single-cell phenotyping☆80Updated last week
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 3 months ago
- ☆36Updated 2 years ago
- open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition☆31Updated 3 years ago
- A browser-based deep learning tool for image annotation, segmentation, classification, and measurement.☆38Updated 3 weeks ago
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆60Updated last year
- Lazily load multiscale whole-slide images with openslide and dask☆34Updated 3 years ago