Alternatives and similar repositories for CellProfiler-Analyst:

Users that are interested in CellProfiler-Analyst are comparing it to the libraries listed below

• CellProfiler / tutorials
  CellProfiler tutorial pipelines and images
  ☆86Updated 3 months ago
• CellProfiler / CellProfiler-plugins
  Community-contributed and experimental CellProfiler modules.
  ☆61Updated 3 weeks ago
• hammerlab / cytokit
  Microscopy Image Cytometry Toolkit
  ☆116Updated 2 years ago
• DistributedScience / Distributed-CellProfiler
  Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
  ☆40Updated this week
• cytomining / cytominer
  Methods for Image-Based Cell Profiling
  ☆49Updated 8 months ago
• carpenterlab / 2016_Bray_NatureProtocols
  Supporting data files, documentation, and updated tips for the Cell Painting protocol
  ☆19Updated 3 years ago
• CellProfiler / python-bioformats
  Read and write life sciences file formats
  ☆133Updated 4 months ago
• cytomining / DeepProfiler
  Morphological profiling using deep learning
  ☆111Updated 3 months ago
• CellProfiler / CellProfiler
  An open-source application for biological image analysis
  ☆943Updated 3 weeks ago
• spreka / biomagdsb
  This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…
  ☆52Updated 4 years ago
• deepimagej / deepimagej-plugin
  The ImageJ plugin to run deep-learning models
  ☆88Updated this week
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆143Updated this week
• WhoIsJack / python-bioimage-analysis-tutorial
  A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.
  ☆97Updated last year
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆118Updated this week
• CellProfiler / stitching
  Image stitching
  ☆12Updated 6 years ago
• RMS-DAIM / Python-for-Bioimage-Analysis
  This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…
  ☆133Updated 4 years ago
• vanvalenlab / intro-to-deepcell
  An introduction to deepcell and deep learning
  ☆144Updated 3 months ago
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆77Updated 11 months ago
• peng-lab / BaSiCPy
  ☆68Updated last month
• ilastik / ilastik
  ilastik-shell, applets, and workflows to string them together.
  ☆353Updated this week
• vanvalenlab / deepcell-tf
  Deep Learning Library for Single Cell Analysis
  ☆434Updated 5 months ago
• broadinstitute / deepometry
  Image classification for imaging flow cytometry.
  ☆27Updated 3 weeks ago
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆85Updated last week
• carpenterlab / unet4nuclei
  U-net based segmentation of nuclei in microscopy images
  ☆52Updated 6 years ago
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 4 years ago
• AllenCellModeling / aicsimageio
  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
  ☆208Updated 2 weeks ago
• zeiss-microscopy / OAD
  Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…
  ☆131Updated last month
• labsyspharm / ashlar
  ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
  ☆134Updated 2 months ago
• haesleinhuepf / BioImageAnalysisNotebooks
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
  ☆129Updated 4 months ago
• CellProfiler / examples
  Example CellProfiler pipelines.
  ☆12Updated 2 years ago