Alternatives and similar repositories for CellProfiler-Analyst:

Users that are interested in CellProfiler-Analyst are comparing it to the libraries listed below

• CellProfiler / CellProfiler-plugins
  Community-contributed and experimental CellProfiler modules.
  ☆63Updated 2 weeks ago
• CellProfiler / tutorials
  CellProfiler tutorial pipelines and images
  ☆89Updated 3 months ago
• cytomining / cytominer
  Methods for Image-Based Cell Profiling
  ☆50Updated 9 months ago
• DistributedScience / Distributed-CellProfiler
  Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
  ☆40Updated 2 weeks ago
• cytomining / DeepProfiler
  Morphological profiling using deep learning
  ☆112Updated 4 months ago
• carpenterlab / 2016_Bray_NatureProtocols
  Supporting data files, documentation, and updated tips for the Cell Painting protocol
  ☆21Updated 3 years ago
• hammerlab / cytokit
  Microscopy Image Cytometry Toolkit
  ☆116Updated 2 years ago
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆77Updated last year
• spreka / biomagdsb
  This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…
  ☆53Updated 4 years ago
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆120Updated 2 weeks ago
• WhoIsJack / python-bioimage-analysis-tutorial
  A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.
  ☆97Updated 2 years ago
• glencoesoftware / bioformats2raw
  Bio-Formats image file format to raw format converter
  ☆85Updated last week
• CellProfiler / python-bioformats
  Read and write life sciences file formats
  ☆136Updated 5 months ago
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆87Updated 2 weeks ago
• vanvalenlab / deepcell-tf
  Deep Learning Library for Single Cell Analysis
  ☆436Updated 5 months ago
• CellProfiler / stitching
  Image stitching
  ☆12Updated 6 years ago
• CovertLab / DeepCell
  ☆49Updated 6 years ago
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆145Updated this week
• AllenCellModeling / pytorch_fnet
  Three dimensional cross-modal image inference
  ☆154Updated 4 years ago
• uhlmanngroup / splinedist
  SplineDist: Automated Cell Segmentation with Spline Curves
  ☆65Updated 4 months ago
• broadinstitute / deepometry
  Image classification for imaging flow cytometry.
  ☆27Updated last month
• fish-quant / big-fish
  Toolbox for the analysis of smFISH images.
  ☆59Updated last year
• BIOP / qupath-extension-cellpose
  an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
  ☆67Updated 5 months ago
• vanvalenlab / intro-to-deepcell
  An introduction to deepcell and deep learning
  ☆144Updated 3 months ago
• spreka / annotatorj
  AnnotatorJ: ImageJ plugin for object annotation in 2D
  ☆24Updated 4 years ago
• carpenterlab / unet4nuclei
  U-net based segmentation of nuclei in microscopy images
  ☆52Updated 6 years ago
• SchapiroLabor / histoCAT
  Histology Topography Cytometry Analysis Toolbox
  ☆66Updated last year
• shntnu / cytomining-hackathon-wiki
  CytoData 2016 – origin story
  ☆18Updated 7 years ago
• CellProfiler / examples
  Example CellProfiler pipelines.
  ☆13Updated 2 years ago
• labsyspharm / ashlar
  ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
  ☆135Updated 2 months ago