AllenInstitute / aics-ml-segmentation
AICS ML Segmentation (One-Way) Mirror
☆27Updated 4 years ago
Alternatives and similar repositories for aics-ml-segmentation
Users that are interested in aics-ml-segmentation are comparing it to the libraries listed below
Sorting:
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- ☆31Updated 2 years ago
- ☆25Updated 4 years ago
- Cell tracking using TensorFlow and BayesianTracker☆22Updated 3 years ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆27Updated 9 months ago
- Tools and scripts for EASI-FISH image data analysis☆17Updated 2 years ago
- Easily read and write ome-tiff images in python☆27Updated last year
- Cloud-based data annotation tools for biological images☆79Updated last year
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 6 months ago
- Cell tracker designed for tracking intestinal organoids☆21Updated this week
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆53Updated 4 years ago
- ☆23Updated last year
- A platform for compiling, analyzing, and exploring tracking data☆44Updated 2 months ago
- The repository of NEUBIAS textbook 2021☆10Updated 3 years ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated last month
- EASI-FISH analysis pipeline for spatial transcriptomics☆34Updated 5 months ago
- ☆12Updated 4 years ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 7 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆37Updated last year
- MorphoFeatures code and data☆21Updated 2 years ago
- Guides and code for 3D nuclear instance segmentation☆22Updated 2 weeks ago
- ☆31Updated 4 years ago
- Track and lineage visualization with btrack and Napari☆45Updated 6 months ago
- Learn morphological states of dynamic cells☆12Updated 2 years ago
- ☆18Updated 2 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 3 months ago
- Piecewise alignment for layers of mosaics☆24Updated last week
- Accelerated Pixel and Object Classifiers (APOC)☆57Updated 2 months ago
- Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…☆29Updated last month
- A Python package using Gromov-Wasserstein distance to compare cell shapes☆17Updated 2 months ago