Image classification for imaging flow cytometry.
☆29Jan 3, 2025Updated last year
Alternatives and similar repositories for deepometry
Users that are interested in deepometry are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Machine Learning Workflow for Imaging Flow Cytometry (IFC)☆12Nov 15, 2017Updated 8 years ago
- This code contains the neural network implementation from the nature communication manuscript NCOMMS-16-25447A.☆33Feb 8, 2018Updated 8 years ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆73Dec 13, 2023Updated 2 years ago
- Deeply supervised density regression for automatic cell counting in microscopy images☆12Jan 31, 2022Updated 4 years ago
- 🧫 Read Flow Cytometry Standard (FCS) files in Julia☆17Jun 13, 2026Updated 3 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Community-contributed and experimental CellProfiler modules.☆77Aug 21, 2026Updated 3 weeks ago
- python module for querying the vicc knowledgebase integration datastore☆11Jul 6, 2023Updated 3 years ago
- A list of (detailed, non-stochastic) action potential models, with links to papers, source code, CellML and Myokit implementations☆12Jul 22, 2026Updated last month
- A framework around Tensorflow-Keras that makes it easy to train and evaluate any deep learning architecture on imaging flow cytometry dat…☆12Dec 8, 2022Updated 3 years ago
- Predicting Cell Health with Morphological Profiles☆41Jan 26, 2022Updated 4 years ago
- A Data Science/Machine Learning Project. According to Bolster , Global Fraud Index (as at June 2022) is at 10,183 and growing. This is h…☆15Jul 25, 2022Updated 4 years ago
- Source code of the Scalable Brain Atlas website (scalablebrainatlas.incf.org)☆15Mar 18, 2016Updated 10 years ago
- Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue image…☆58May 8, 2024Updated 2 years ago
- VEGA: VAE Enhanced by Gene Annotations☆18May 5, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Image Cytometry Standard file reading and writing.☆18Jan 5, 2026Updated 8 months ago
- 一步步带你通过项目（MNIST手写识别）学习入门TensorFlow以及神经网络的知识☆11Oct 5, 2018Updated 7 years ago
- ☆23Jan 6, 2026Updated 8 months ago
- CellProfiler tutorial pipelines and images☆104Updated this week
- ☆11Jun 4, 2021Updated 5 years ago
- ☆17Jun 5, 2024Updated 2 years ago
- RDKit integration to SQLAlchemy☆10Oct 6, 2020Updated 5 years ago
- A Python toolbox for quantitative, reproducible flow cytometry analysis☆226Jul 17, 2026Updated 2 months ago
- WEKA classifier to execute arbitrary Python scripts☆13Jul 18, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A Python module for accessing Hamamatsu DCIMG files☆14Jun 28, 2023Updated 3 years ago
- Ultra-fast spatial proteomics OME-Zarr viewer built in Rust.☆78Aug 28, 2026Updated 3 weeks ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆55Sep 14, 2020Updated 6 years ago
- 3D_Coronary_Artery_Segmentation☆12Feb 23, 2022Updated 4 years ago
- VAE, Variational Autoencoder, Deep Learning, Medical Imaging☆20Feb 23, 2022Updated 4 years ago
- dataset info for the neurofinder challenge☆13Aug 3, 2016Updated 10 years ago
- Help augment diagnostic workflows with this Databricks Solution Accelerator for pathology image analysis. Now you can rapidly process tho…☆18Jul 7, 2025Updated last year
- cytofkit: an integrated flow/mass cytometry data analysis pipeline☆61Dec 17, 2020Updated 5 years ago
- Example usage of the Benchling API: https://docs.benchling.com/☆38Jun 10, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- U-net based segmentation of nuclei in microscopy images☆56Sep 13, 2018Updated 8 years ago
- The implementation of our paper Fed-TDA☆15Jan 11, 2023Updated 3 years ago
- Official implementation of our work: "Automated Identification of Cell Populations in Flow Cytometry Data with Transformers"☆17Jun 30, 2023Updated 3 years ago
- Stack denoising autoencoder (SdA) code in "Deep learning based functional site-level and UTR-level human miRNA target prediction"☆11May 7, 2019Updated 7 years ago
- Self-supervised learning for microscopy images☆55Sep 16, 2019Updated 7 years ago
- ☆14Updated this week
- Code and models for Molecule-Morphology Contrastive Pretraining (MoCoP)☆13Apr 12, 2024Updated 2 years ago