broadinstitute / deepometryLinks
Image classification for imaging flow cytometry.
☆28Updated 7 months ago
Alternatives and similar repositories for deepometry
Users that are interested in deepometry are comparing it to the libraries listed below
Sorting:
- Community-contributed and experimental CellProfiler modules.☆68Updated this week
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆21Updated 3 years ago
- Methods for Image-Based Cell Profiling☆51Updated last year
- Predicting Cell Health with Morphological Profiles☆37Updated 3 years ago
- Morphological profiling using deep learning☆117Updated 9 months ago
- CellProfiler tutorial pipelines and images☆93Updated 3 months ago
- Self-supervised models for encoding protein localization patterns from microscopy images☆77Updated 10 months ago
- Python package for processing image-based profiling data☆119Updated this week
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆41Updated 3 weeks ago
- Open-source software for exploring and analyzing large, high-dimensional image-derived data.☆158Updated 2 weeks ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- Microscopy Image Cytometry Toolkit☆116Updated 3 years ago
- ☆64Updated 5 months ago
- Find profile pairs and compute metrics between them.☆17Updated last month
- FlowSOM algorithm in Python, using self-organizing maps and minimum spanning tree for visualization and interpretation of cytometry data☆33Updated 3 years ago
- This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…☆54Updated 4 years ago
- Multiple-choice microscopy pipeline☆136Updated 2 weeks ago
- A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.☆98Updated 2 years ago
- Read and write life sciences file formats☆140Updated last month
- Subpopulation detection in high-dimensional single-cell data☆136Updated 4 years ago
- Python Flow Cytometry Calibration Library☆52Updated 3 months ago
- Cloud-based data annotation tools for biological images☆81Updated last year
- Histology Topography Cytometry Analysis Toolbox☆67Updated last year
- Three dimensional cross-modal image inference☆158Updated 4 years ago
- CytoData 2016 – origin story☆18Updated 7 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆53Updated last month
- Toolbox for the analysis of smFISH images.☆68Updated last year
- Optimizing the Cell Painting assay for image-based profiling☆20Updated 7 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated 2 years ago
- Subpopulation detection in high-dimensional single-cell data☆69Updated 4 years ago