CellProfiler / stitching
Image stitching
☆12Updated 6 years ago
Alternatives and similar repositories for stitching:
Users that are interested in stitching are comparing it to the libraries listed below
- Jupyter notebooks for CellProfiler and friends☆12Updated 6 years ago
- Supporting data files, documentation, and updated tips for the Cell Painting protocol☆20Updated 3 years ago
- Community-contributed and experimental CellProfiler modules.☆63Updated 2 weeks ago
- Jupyter Notebooks for the Image Data Resource☆18Updated 2 years ago
- Jupyter notebooks from our OMERO Plus for High Content Screening & Analysis webinar☆12Updated last year
- Open-source software for exploring and analyzing large, high-dimensional image-derived data.☆150Updated 6 months ago
- Python nd2 reader based on the ND2 SDK☆16Updated 3 years ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆34Updated last year
- Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.☆40Updated 2 weeks ago
- Cell tracking using TensorFlow and BayesianTracker☆22Updated 3 years ago
- Image classification for imaging flow cytometry.☆27Updated last month
- AICS ML Segmentation (One-Way) Mirror☆27Updated 3 years ago
- Curated metadata for all studies published in the Image Data Resource☆14Updated last month
- Predicting Cell Health with Morphological Profiles☆35Updated 3 years ago
- Methods for Image-Based Cell Profiling☆49Updated 9 months ago
- ☆21Updated last year
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆28Updated 2 weeks ago
- An Ilastik-like interactive pixel classifier.☆16Updated 5 months ago
- Whole slide image registration through wsireg in napari.☆13Updated last year
- File format for 96-well plate layouts.☆22Updated last year
- Model repository for bioimage.io☆16Updated last year
- Algorithmic and Utility Extensions for the Imaris Program☆14Updated 4 months ago
- 3D virtual staining with 2D and 2.5D U-Nets☆27Updated last year
- Tool for segmentation in bioimaging☆31Updated this week
- Histology Topography Cytometry Analysis Toolbox☆66Updated last year
- Self-supervised models for encoding protein localization patterns from microscopy images☆75Updated 5 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆41Updated 3 months ago
- ☆13Updated 5 months ago
- CellProfiler tutorial pipelines and images☆89Updated 3 months ago