Alternatives and similar repositories for stitching:

Users that are interested in stitching are comparing it to the libraries listed below

• CellProfiler / notebooks
  Jupyter notebooks for CellProfiler and friends
  ☆13Updated 7 years ago
• carpenterlab / 2016_Bray_NatureProtocols
  Supporting data files, documentation, and updated tips for the Cell Painting protocol
  ☆21Updated 3 years ago
• CellProfiler / CellProfiler-plugins
  Community-contributed and experimental CellProfiler modules.
  ☆64Updated last week
• IDR / idr-notebooks
  Jupyter Notebooks for the Image Data Resource
  ☆18Updated 2 years ago
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆37Updated last year
• PreibischLab / STIM
  Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.
  ☆27Updated 2 months ago
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 4 years ago
• mobie / mobie-viewer-fiji
  ☆35Updated this week
• IDR / idr-metadata
  Curated metadata for all studies published in the Image Data Resource
  ☆16Updated 3 weeks ago
• qupath / qupath-extension-instanseg
  The official QuPath extension for InstanSeg
  ☆16Updated last week
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆52Updated 11 months ago
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆30Updated 3 months ago
• broadinstitute / cell-health
  Predicting Cell Health with Morphological Profiles
  ☆36Updated 3 years ago
• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆24Updated this week
• cytomining / cytominer
  Methods for Image-Based Cell Profiling
  ☆51Updated 11 months ago
• broadinstitute / imaging-platform-pipelines
  Cell Painting and other pipelines from the Imaging Platform
  ☆17Updated 3 months ago
• DistributedScience / Distributed-CellProfiler
  Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
  ☆41Updated last week
• michaellee1 / CellSeg
  ☆23Updated last year
• miti-consortium / MITI
  Minimum Information about Tissue Imaging
  ☆20Updated last year
• SchapiroLabor / histoCAT
  Histology Topography Cytometry Analysis Toolbox
  ☆67Updated last year
• vitessce / vitessce-python
  Python API and Jupyter widget for Vitessce
  ☆44Updated this week
• CellProfiler / examples
  Example CellProfiler pipelines.
  ☆15Updated 2 years ago
• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆25Updated last year
• HiDiHlabs / ssam
  ☆28Updated 6 months ago
• PreibischLab / RS-FISH
  Tool for precise, interactive, fast and scalable FISH spot detection
  ☆49Updated 3 months ago
• alexandrovteam / SpaceM
  ☆15Updated 7 months ago
• fish-quant / big-fish
  Toolbox for the analysis of smFISH images.
  ☆59Updated last year
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆24Updated 3 weeks ago
• spreka / biomagdsb
  This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…
  ☆53Updated 4 years ago
• CellProfiler / tutorials
  CellProfiler tutorial pipelines and images
  ☆93Updated last week