petebankhead / qupathLinks
QuPath - Open-source bioimage analysis for research
☆49Updated this week
Alternatives and similar repositories for qupath
Users that are interested in qupath are comparing it to the libraries listed below
Sorting:
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆69Updated 3 weeks ago
- Bio-Formats image file format to raw format converter☆92Updated last week
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 8 months ago
- StarDist plugin for ImageJ☆30Updated 3 years ago
- Multiple file format reading directly into napari using pure Python☆36Updated 10 months ago
- List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images☆25Updated 2 years ago
- ☆81Updated 2 months ago
- ☆26Updated 3 weeks ago
- multimodal whole slide image registration in a graph structure☆85Updated 11 months ago
- Raw format to OME-TIFF converter☆53Updated last week
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆54Updated 2 weeks ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆142Updated 3 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated this week
- QuPath extension to run StarDist nucleus detection☆39Updated last month
- QuPath extension for Segment Anything Model (SAM)☆108Updated 2 months ago
- ☆35Updated this week
- Python module utilizing libCZI for reading Zeiss CZI files.☆38Updated last month
- Toolkit to help develop and run QuPath scripts from Eclipse and other IDEs, including over remote connections. (See README.md for more in…☆17Updated 4 years ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated last month
- Lab for quantitative bioimage analysis experiments in Python☆13Updated 4 months ago
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago
- QuPath extension to interactively align images☆23Updated this week
- PAthological QUpath Obsession - QuPath and Python conversations☆115Updated 5 months ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆37Updated last week
- ☆33Updated last year
- Piecewise alignment for layers of mosaics☆24Updated last week
- CellProfiler tutorial pipelines and images☆93Updated 3 weeks ago
- ImageJ plugins to run ilastik workflows☆25Updated 4 months ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆137Updated last week
- Browse your OMERO database from within napari.☆37Updated this week