QuPath - Open-source bioimage analysis for research
☆51Nov 3, 2026Updated this week
Alternatives and similar repositories for qupath
Users that are interested in qupath are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- StarDist plugin for ImageJ☆32May 9, 2022Updated 4 years ago
- QuPath - Open-source bioimage analysis for research☆1,475Updated this week
- List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images☆29Dec 5, 2022Updated 3 years ago
- QuPath extension to interactively align images☆30Aug 7, 2025Updated last year
- Toolkit to help develop and run QuPath scripts from Eclipse and other IDEs, including over remote connections. (See README.md for more in…☆17Aug 19, 2020Updated 6 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- FLIM-focused framework for multimodal single-cell imaging: extract features from FLIM and QPI data, then analyze any tabular dataset inte…☆19Updated this week
- An introduction to bioimage analysis - http://bioimagebook.github.io☆76Oct 21, 2026Updated 2 weeks ago
- ☆20May 1, 2025Updated last year
- A proof of concept to run python segmentations and recovering the results within QuPath☆19Feb 13, 2021Updated 5 years ago
- HistoQC is an open-source quality control tool for digital pathology slides☆332Sep 16, 2026Updated last month
- ☆33May 2, 2024Updated 2 years ago
- SlideJ: an ImageJ plugin for WSI processing☆17Nov 7, 2019Updated 6 years ago
- Imagej toolset to ease hyperstacks visualization and handling☆23Feb 9, 2026Updated 8 months ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Single-cell morphological analysis☆16Apr 23, 2026Updated 6 months ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆21Oct 21, 2022Updated 4 years ago
- Python library for analyzing mass spectrometry proteomics data.☆15Mar 20, 2024Updated 2 years ago
- A Julia implementation of the Targeted Minimum Loss-based Estimation☆26Sep 26, 2026Updated last month
- Data logging software USB driver for the Hyelec/Peakmeter MS8236 multimeter☆14Dec 21, 2019Updated 6 years ago
- Integrative Transcriptome-Histopathology Analysis for Breast Cancer Classification☆10Jan 15, 2021Updated 5 years ago
- 3D virtual staining with 2D and 2.5D U-Nets☆34Jul 29, 2023Updated 3 years ago
- An implementation of Unet for pytorch designed for digital pathology segmentation☆128Aug 23, 2022Updated 4 years ago
- Spatial RNA velocity☆11Oct 3, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Holds the code and data to reproduce the analyses of Danaher & Kim et a;, "Advances in mixed cell deconvolution enable quantification of …☆13Dec 8, 2021Updated 4 years ago
- Read Leica image files (LIF, LOF, XLIF, XLEF, XLCF, XLLF, and LIFEXT).☆18Oct 14, 2026Updated 3 weeks ago
- ☆11Aug 4, 2026Updated 3 months ago
- All design files and scripts necessary for the construction and use of the optoPlate-96☆11Apr 28, 2022Updated 4 years ago
- Shiny app for making and annotating Volcano plots☆26Dec 12, 2025Updated 10 months ago
- convert your archive that you download from twitter into a maildir you can load in a mail client☆12Jan 28, 2022Updated 4 years ago
- renders the mandlebrot fractal entirely in the browser using leaflet☆16Feb 16, 2026Updated 8 months ago
- Lab manual for the MemoLab, www.thememolab.org☆11Jun 30, 2020Updated 6 years ago
- Breast cancer is one of the common known cancer and IDC is the most common form of breast cancer. It is very important to identify and ca…☆11Feb 26, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Examples and code for optical pooled screens☆10Dec 8, 2022Updated 3 years ago
- Home of the miCube GithubPages documents.☆12Oct 3, 2026Updated last month
- Quanfima (Quantitative Analysis of Fibrous Materials)☆30Feb 3, 2024Updated 2 years ago
- Viscello for Visualization of Single Cell Data☆27Oct 5, 2024Updated 2 years ago
- Multi-scale CNNs for histopathology image segmentation☆11Feb 28, 2021Updated 5 years ago
- Acquire bright field images along with the super resolution data and use it to track drift in 3D with nanometer precision!☆11Jun 22, 2023Updated 3 years ago
- Open source SMLM microscope designs☆13May 31, 2023Updated 3 years ago