petebankhead / qupath
QuPath - Open-source bioimage analysis for research
☆49Updated this week
Alternatives and similar repositories for qupath:
Users that are interested in qupath are comparing it to the libraries listed below
- List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images☆25Updated 2 years ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆67Updated 6 months ago
- Bio-Formats image file format to raw format converter☆87Updated 3 weeks ago
- multimodal whole slide image registration in a graph structure☆83Updated 9 months ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 6 months ago
- ☆70Updated 3 weeks ago
- Piecewise alignment for layers of mosaics☆23Updated 3 months ago
- StarDist plugin for ImageJ☆29Updated 2 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆52Updated 2 months ago
- CellProfiler tutorial pipelines and images☆94Updated 2 weeks ago
- Lab for quantitative bioimage analysis experiments in Python☆12Updated 2 months ago
- Toolkit to help develop and run QuPath scripts from Eclipse and other IDEs, including over remote connections. (See README.md for more in…☆17Updated 4 years ago
- ☆35Updated 2 weeks ago
- ☆25Updated 2 months ago
- PAthological QUpath Obsession - QuPath and Python conversations☆114Updated 3 months ago
- QuPath extension to run StarDist nucleus detection☆39Updated 2 months ago
- Multiple file format reading directly into napari using pure Python☆35Updated 8 months ago
- QuPath extension to interactively align images☆23Updated 4 months ago
- Raw format to OME-TIFF converter☆50Updated last month
- Python module utilizing libCZI for reading Zeiss CZI files.☆37Updated last week
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆138Updated last month
- ☆153Updated 2 weeks ago
- ☆31Updated last year
- Transfer trained StarDist models across imaging modalities☆3Updated 6 months ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆43Updated 3 weeks ago
- ImageJ plugins to run ilastik workflows☆24Updated 2 months ago
- Lazily load multiscale whole-slide images with openslide and dask☆33Updated 2 years ago
- An introduction to bioimage analysis - http://bioimagebook.github.io☆67Updated 8 months ago
- Browse your OMERO database from within napari.☆36Updated 2 weeks ago
- The 2023 version of cellPLATO☆14Updated 4 months ago