Official repository of "Multi-level Interaction Modeling for Protein Mutational Effect Prediction"
☆11Jun 30, 2024Updated 2 years ago
Alternatives and similar repositories for ProMIM
Users that are interested in ProMIM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Sep 18, 2023Updated 2 years ago
- Official implementation for the paper "EBMDOCK: NEURAL PROBABILISTIC PROTEIN-PROTEIN DOCKING VIA A DIFFERENTIABLE ENERGY-BASED MODEL" (IC…☆14Apr 24, 2024Updated 2 years ago
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆37Dec 11, 2023Updated 2 years ago
- [ICML 2025] Hierarchical Graph Tokenization for Molecule-Language Alignment☆17Aug 18, 2025Updated last year
- Codebase of the paper "Aligning Protein Conformation Ensemble Generation with Physical Feedback" (ICML 2025)☆18Jul 6, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆12Aug 26, 2024Updated 2 years ago
- ☆19Mar 16, 2025Updated last year
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆135Feb 26, 2025Updated last year
- Official implementation of From Supervision to Exploration: What Does Protein Language Model Learn During Reinforcement Learning?☆15Jun 19, 2026Updated 2 months ago
- ☆33Aug 12, 2024Updated 2 years ago
- Vabs-Net: Pre-Training Protein Bi-level Representation Through Span Mask Strategy On 3D Protein Chains☆17Sep 12, 2024Updated last year
- [Nature Communications] The implementation for the paper "An equivariant pretrained transformer for unified 3D molecular representation l…☆17Jun 25, 2026Updated 2 months ago
- Epitope Prediction Pipeline and analysis tools built around AlphaFold 2☆20May 9, 2024Updated 2 years ago
- design pipeline for protein, nucleic acid, and small molecule☆45Mar 5, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Official implementation for our paper: Repurposing AlphaFold3-like Protein Folding Models for Antibody Sequence and Structure Co-design☆48Jan 8, 2026Updated 7 months ago
- [ICLR 2024] Protein-Ligand Interaction Prior for Binding-aware 3D Molecule Diffusion Models☆61Sep 6, 2024Updated last year
- ☆10Aug 8, 2024Updated 2 years ago
- Interpreting Chest X-rays Like a Radiologist: A Benchmark with Clinical Reasoning, release the dataset and the model weight☆13May 26, 2025Updated last year
- Code for AAAI 2024 paper "PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein In…☆28Feb 8, 2025Updated last year
- Pretrainable geometric graph neural network for antibody affinity maturation☆84Mar 18, 2025Updated last year
- Read GDB (Esri File GeoDatabase) using Apache Spark☆16Jul 28, 2026Updated last month
- Dataset and package for working with protein-protein interactions in 3D☆109Apr 28, 2025Updated last year
- Code for ICML 2024 paper "Learning to Predict Mutational Effects of Protein-Protein Interactions by Microenvironment-aware Hierarchical P…☆42Oct 8, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)☆46Jun 17, 2024Updated 2 years ago
- 美团爬虫,优化了部分中断处理,以及IP代理池☆14Mar 2, 2021Updated 5 years ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆38Nov 7, 2024Updated last year
- VGG transfer learning and Class Activation Mapping☆14Apr 6, 2019Updated 7 years ago
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆112May 25, 2025Updated last year
- ☆37Jan 15, 2023Updated 3 years ago
- ☆24Jul 20, 2026Updated last month
- ☆15May 29, 2024Updated 2 years ago
- The code for NeurIPS 2023 paper DSR☆14Oct 8, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Code fo ICLR2025 paper "A Simple yet Effective DDG Predictor is An Unsupervised Antibody Optimizer and Explainer"☆24Jul 18, 2025Updated last year
- ☆62Sep 11, 2024Updated last year
- Code for PromptNet☆16Jan 29, 2025Updated last year
- ☆20Apr 24, 2026Updated 4 months ago
- ☆110Apr 1, 2023Updated 3 years ago
- ☆14Jan 23, 2025Updated last year
- a project to manipulate pdb files☆10Mar 6, 2024Updated 2 years ago