Ced3-han / PepHARLinks
[ICLR 2025] Hotspot-Driven Peptide Design via Multi-Fragment Autoregressive Extension
☆16Updated 8 months ago
Alternatives and similar repositories for PepHAR
Users that are interested in PepHAR are comparing it to the libraries listed below
Sorting:
- ☆34Updated 2 years ago
- Code for humanization of antibody and nanobody☆71Updated 5 months ago
- This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)☆42Updated last year
- Repository for paper Nanobody–antigen interaction prediction with ensemble deep learning and prompt-based protein language models.☆43Updated last year
- workflow used to prepare PPB-Affinity database☆28Updated last year
- ☆13Updated 8 months ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆23Updated last year
- ☆61Updated last year
- ☆15Updated last year
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆106Updated this week
- ☆46Updated 7 months ago
- ☆19Updated 2 months ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆111Updated 3 months ago
- Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction☆13Updated last year
- ☆74Updated 5 years ago
- ☆17Updated last month
- AbEpiTope-1.0 is a computational tool that features two scores: AbEpiScore-1.0, designed for assessing the accuracy of modelled AbAg inte…☆28Updated 3 months ago
- Pretrainable geometric graph neural network for antibody affinity maturation☆70Updated 10 months ago
- ☆39Updated last year
- Official open-source of Antibody Design Using a Score-based Diffusion Model Guided by Evolutionary, Physical, and Geometric Constraints☆47Updated 7 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆91Updated 7 months ago
- code for IDR binding paper 2025☆67Updated 11 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆32Updated last year
- ☆33Updated last year
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆82Updated 8 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆60Updated 3 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆47Updated 2 months ago
- ☆55Updated 4 months ago
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆52Updated last year