Alternatives and similar repositories for PeptideCLM

Users that are interested in PeptideCLM are comparing it to the libraries listed below

• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆38Updated 9 months ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆33Updated 3 months ago
• vsomnath / flexdock
  Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)
  ☆43Updated 2 weeks ago
• TviNet / NetSolP-1.0
  Predicts the solubility and usability for purification of proteins expressed in E. coli using protein language models
  ☆37Updated 6 months ago
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆37Updated 3 months ago
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆39Updated last year
• anton-bushuiev / PPIformer
  Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)
  ☆44Updated 5 months ago
• LDeng0205 / confidence-bootstrapping
  Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.
  ☆26Updated last year
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆43Updated 7 months ago
• ohuelab / ColabDesign-cyclic-binder
  ☆32Updated last year
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆49Updated last month
• hesther / enzymemap
  Python package to atom map, correct and suggest enzymatic reactions
  ☆38Updated last year
• DeepGraphLearning / esm-s
  Structure-Informed Protein Language Model
  ☆34Updated last year
• KoubaPetr / Flexpert
  Code for the paper "Learning to engineer protein flexibility".
  ☆18Updated 3 months ago
• KexinZhangResearch / PhysDock
  Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction
  ☆61Updated 2 months ago
• iamysk / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆51Updated last week
• iambic-therapeutics / np-bench
  A benchmark for 3D biomolecular structure prediction models
  ☆60Updated last month
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆44Updated 7 months ago
• Kuhlman-Lab / evopro
  ☆81Updated 2 weeks ago
• mjendrusch / salad
  protein structure generation with sparse all-atom denoising models
  ☆32Updated last month
• jsunn-y / CARE
  CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes
  ☆34Updated 2 weeks ago
• HannesStark / CodonMPNN
  ☆27Updated 6 months ago
• Graylab / DFMDock
  DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.
  ☆47Updated 2 weeks ago
• wangxr0526 / EasIFA
  Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”
  ☆37Updated 3 months ago
• microsoft / bioemu-benchmarks
  Benchmarking code accompanying the release of `bioemu`
  ☆32Updated 2 weeks ago
• kirjner / GGS
  This repository implements Gibbs sampling with Graph-based Smoothing
  ☆38Updated last year
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆33Updated 7 months ago
• compsciencelab / mdCATH
  This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…
  ☆43Updated 7 months ago
• KULL-Centre / _2024_cagiada_stability
  ☆68Updated 3 months ago
• instadeepai / FrameDiPT
  FrameDiPT: an SE(3) diffusion model for protein structure inpainting
  ☆55Updated last year