HenriquesLab / PhotoFiTTLinks
Computational workflows to assess phototoxicity in live-cell microscopy experiments
☆11Updated 4 months ago
Alternatives and similar repositories for PhotoFiTT
Users that are interested in PhotoFiTT are comparing it to the libraries listed below
Sorting:
- A napari plugin to analysis point spread functions.☆12Updated 10 months ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆19Updated last month
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last week
- ☆12Updated 4 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated last year
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work …☆10Updated 2 years ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆16Updated 3 years ago
- ☆13Updated 5 years ago
- dask empowered fast4dreg☆15Updated last year
- napari plugin for trackastra☆17Updated 2 months ago
- python tools for BigDataViewer☆22Updated last year
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 8 months ago
- ☆15Updated last week
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆102Updated this week
- ☆51Updated 8 months ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated 2 years ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 9 months ago
- A napari plugin to load & deskew folders of lattice light sheet TIFFs☆13Updated 3 weeks ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 9 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆20Updated 3 months ago
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆18Updated 9 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Updated 2 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆11Updated 2 years ago
- Browse your OMERO database from within napari.☆40Updated 2 weeks ago
- ☆49Updated last month
- An R package to detect collective spatio-temporal phenomena☆13Updated 4 months ago
- Particle tracking by solving linear assignment problem.☆61Updated last month
- Use Napari Viewer to display CZI images☆11Updated 3 years ago
- A napari plugin to view and edit metadata☆13Updated last week