WhoIsJack / python-bioimage-analysis-tutorial
A self-explanatory, hands-on intro to bioimage analysis in python. Slightly outdated but still much liked by learners.
☆94Updated last year
Related projects ⓘ
Alternatives and complementary repositories for python-bioimage-analysis-tutorial
- A platform for compiling, analyzing, and exploring tracking data☆42Updated 3 weeks ago
- NEUBIAS Academy @Home: Interactive Bioimage Analysis with Python and Jupyter☆61Updated last year
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆132Updated 4 years ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆125Updated 2 months ago
- Toolbox for the analysis of smFISH images.☆57Updated last year
- EASI-FISH analysis pipeline for spatial transcriptomics☆33Updated this week
- An introduction to bioimage analysis - http://bioimagebook.github.io☆60Updated 3 months ago
- Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecu…☆198Updated last year
- Lectures for a napari training course☆50Updated last year
- ☆67Updated last week
- CellProfiler tutorial pipelines and images☆84Updated 3 weeks ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆47Updated last month
- Multiple-choice microscopy pipeline☆113Updated last month
- A module with convenience functions for writing Python code that interacts with OMERO.☆39Updated 3 weeks ago
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated last month
- Track and lineage visualization with btrack and Napari☆45Updated 3 weeks ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆35Updated last year
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆48Updated 3 weeks ago
- The 2023 version of cellPLATO☆13Updated last week
- A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data☆134Updated this week
- ☆10Updated 3 years ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 2 weeks ago
- AICS Segmentation (One-Way) Mirror☆45Updated 3 years ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆70Updated this week
- Tools and scripts for EASI-FISH image data analysis☆17Updated 2 years ago
- A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.☆121Updated 2 months ago
- ☆19Updated 3 years ago
- StarDist plugin for napari☆36Updated 3 months ago
- Interactive visualization of spatial omics data☆41Updated this week
- Accurate and efficient spot detection for microscopy data☆62Updated last week