Functional ANnoTAtion based on embedding space SImilArity
☆18Jul 23, 2026Updated 2 weeks ago
Alternatives and similar repositories for FANTASIA
Users that are interested in FANTASIA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for generating model and predictions for CAFA5 competition 2023 (4th place solution)☆19Aug 3, 2026Updated last week
- Tiberius is a deep learning gene finder.☆129Jul 27, 2026Updated 2 weeks ago
- A (very) simple script to QC Hi-C data.☆27Feb 25, 2026Updated 5 months ago
- MCHelper: An automatic tool to curate transposable element libraries☆50Updated this week
- R package for comparison of synteny conservation at the genome-wide scale.☆16Jun 6, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- TD2☆41May 17, 2026Updated 2 months ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- ☆36Sep 3, 2025Updated 11 months ago
- A Python Tool for Benchmarking Ontological Classification Methods☆54Jan 19, 2026Updated 6 months ago
- ☆15Nov 25, 2019Updated 6 years ago
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆82Aug 22, 2025Updated 11 months ago
- Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.96…☆18Nov 18, 2024Updated last year
- The ERGA Assembly Reports repository 👂☆16Updated this week
- Infering ancestral synteny with hierarchical orthologous groups☆38Jun 26, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆23Updated this week
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆28Jul 15, 2026Updated 3 weeks ago
- FastK based version of Merqury☆33Jan 19, 2026Updated 6 months ago
- RepeatIdentifier☆74Mar 19, 2025Updated last year
- ☆61Sep 11, 2024Updated last year
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆22Mar 25, 2022Updated 4 years ago
- Chromosome-level synteny plotting using orthologous regions☆32Sep 19, 2024Updated last year
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆53Feb 8, 2026Updated 6 months ago
- ☆17Aug 3, 2026Updated last week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A Python wrapper for the UniProt Mapping RESTful API.☆16Mar 2, 2026Updated 5 months ago
- oxford dot plots☆173Jul 2, 2026Updated last month
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Dec 8, 2020Updated 5 years ago
- Pooling by PageRank Token Importance. This is a weighted average pooling method where the weights are derived from the internal attention…☆20Jun 11, 2025Updated last year
- ☆13Jun 25, 2025Updated last year
- Base Scipion plugin defining objects and protocols for CHEMoinformatics☆15Aug 3, 2026Updated last week
- A genome completeness evaluation tool based on miniprot☆259Jul 29, 2026Updated last week
- (DRExM³L) Drug REpurposing using eXplainable Machine Learning and Mechanistic Models of signal transduction☆12Jun 5, 2026Updated 2 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆113Jun 12, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Neural Networks for Protein Sequence Alignment☆139Nov 11, 2024Updated last year
- ☆22Jun 11, 2026Updated last month
- Stock Trading Model using Q Learning☆10Dec 16, 2020Updated 5 years ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆129Jun 18, 2026Updated last month
- R package to draw syntenic plots in 3 different styles☆46Feb 2, 2026Updated 6 months ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆114Jul 11, 2026Updated last month