zongmingchua / cafa5
Code for generating model and predictions for CAFA5 competition 2023 (4th place solution)
☆11Updated 5 months ago
Related projects ⓘ
Alternatives and complementary repositories for cafa5
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆29Updated 2 weeks ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆31Updated 2 years ago
- ☆28Updated 3 weeks ago
- Predict the structure of immune receptor proteins☆47Updated 2 weeks ago
- Deep learning prediction of enzyme optimum pH☆25Updated 11 months ago
- Rendering protein mutation movies from predicted 3D structures☆20Updated 11 months ago
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆30Updated last month
- Graph Network for protein-protein interface including language model features☆25Updated 7 months ago
- Results and data from the pilot round of the Protein Engineering Tournament☆22Updated last week
- Singularity recipe for AlphaFold☆33Updated last week
- GO2Sum is a deep learning based summarizer that generates human-readable summaries for GO term annotations made by protein function predi…☆12Updated 7 months ago
- ☆53Updated last month
- Transmembrane proteins predicted through Language Model embeddings☆30Updated 8 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆56Updated 3 years ago
- Evolutionary conservation estimation of residues or nucleotides☆33Updated 2 years ago
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆36Updated 2 months ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆28Updated 2 years ago
- DeepECtransformer☆22Updated last year
- ☆29Updated last year
- Detection of remote homology by comparison of protein language model representations☆44Updated this week
- ☆29Updated last month
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆18Updated 3 months ago
- ☆27Updated 3 months ago
- Evolutionary velocity with protein language models☆83Updated last year
- ColabFold protocol☆44Updated last month
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Updated 2 weeks ago
- ☆46Updated 5 months ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆33Updated 2 months ago
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆16Updated last year
- a collection of colabs useful for molecular biology☆27Updated 8 months ago