A Nextflow DSL2 pipeline for pretext generation in curation
☆14Oct 22, 2026Updated 2 weeks ago
Alternatives and similar repositories for curationpretext
Users that are interested in curationpretext are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- OpenGL Powered Pretext Contact Map Viewer☆64Updated this week
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆28Updated this week
- Tandem repeats annotation tool☆13Oct 26, 2026Updated last week
- ☆12Jan 8, 2026Updated 9 months ago
- order a FASTA file by microchromosome specific genes☆12Feb 4, 2026Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆13Mar 8, 2024Updated 2 years ago
- Functional ANnoTAtion based on embedding space SImilArity☆22Sep 26, 2026Updated last month
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Nov 6, 2025Updated last year
- Multi-genome synteny block visualization tool☆67Oct 30, 2026Updated last week
- Genome alignment and synteny plots☆36Mar 24, 2026Updated 7 months ago
- ☆12Jul 1, 2026Updated 4 months ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- WinPCA. A package for windowed principal component analysis.☆54Jun 9, 2026Updated 4 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆21Oct 2, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- material related to the genetech courses☆10Sep 11, 2023Updated 3 years ago
- An assembly workflow for analysing data in the Earth Biogenome Project pilot project.☆19Updated this week
- Pipelines for the production of Treeval data☆31Oct 30, 2026Updated last week
- Interactive quality assessment of genome assemblies☆130Aug 5, 2026Updated 3 months ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆31Jan 15, 2026Updated 9 months ago
- Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.☆21Apr 24, 2024Updated 2 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆117Sep 28, 2026Updated last month
- Package for species delimitation analysis☆11Jan 7, 2025Updated last year
- GONE: Scripts, programs and an example data set☆57May 12, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python wrappers for programs that search for transposable elements☆19Jul 12, 2016Updated 10 years ago
- SRF: Satellite Repeat Finder☆111Jan 8, 2024Updated 2 years ago
- A Nextflow pipeline for the production of genome assemblies from long reads and Hi-C data for the Tree of Life project☆42Updated this week
- ☆13Jan 29, 2025Updated last year
- A served-oriented repository of Shiny apps and Rmd documents☆11Feb 18, 2026Updated 8 months ago
- Nextflow DSL2 pipeline to call variants on long read alignment.☆11Oct 27, 2026Updated last week
- BRAKER re-implemented with snakemake☆95Oct 27, 2026Updated last week
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆119Updated this week
- Eukaryote Genome Annotation☆31Oct 14, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆16Updated this week
- Fits a generalized form of the covarion model that allows different transition rate classes on different portions of a phylogeny by treat…☆15Oct 16, 2026Updated 3 weeks ago
- ☆32Mar 27, 2024Updated 2 years ago
- Script for parsing and displaying node status information of the HPC Sapelo2 at UGA.☆12Nov 9, 2020Updated 5 years ago
- Simulation package for getting gene tree distributions and loci / SNPs from input tree topologies and migration / Ne scenarios. Wraps aro…☆14Jul 29, 2026Updated 3 months ago
- A birth-death-hybridization based phylogenetic network simulator.☆11Oct 2, 2024Updated 2 years ago
- A genome assembly finishing tool☆11Dec 1, 2021Updated 4 years ago