A Nextflow DSL2 pipeline for pretext generation in curation
☆14Oct 8, 2026Updated last week
Alternatives and similar repositories for curationpretext
Users that are interested in curationpretext are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆28Jul 15, 2026Updated 3 months ago
- OpenGL Powered Pretext Contact Map Viewer☆63Updated this week
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Nov 6, 2025Updated 11 months ago
- ☆11Jan 8, 2026Updated 9 months ago
- material related to the genetech courses☆10Sep 11, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Multi-genome synteny block visualization tool☆67Updated this week
- Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig…☆14Aug 6, 2022Updated 4 years ago
- WinPCA. A package for windowed principal component analysis.☆54Jun 9, 2026Updated 4 months ago
- Nextflow DSL2 pipeline to call variants on long read alignment.☆11Sep 14, 2026Updated last month
- A served-oriented repository of Shiny apps and Rmd documents☆11Feb 18, 2026Updated 7 months ago
- kmerfreq count K-mer (with size K) frequency from the input sequence data, typically sequencing reads data, and refe rence genome data is…☆20Mar 30, 2020Updated 6 years ago
- Notes on DNA methylation analysis☆12Aug 11, 2026Updated 2 months ago
- ☆13Jun 17, 2023Updated 3 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Sep 28, 2026Updated 2 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Detecting multi-genome synteny using minimizer graph mapping☆117Sep 28, 2026Updated 2 weeks ago
- ☆16Apr 9, 2021Updated 5 years ago
- Analysis of Multivariate Event Times https://kkholst.github.io/mets/☆16Updated this week
- Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraplo…☆16Jul 30, 2026Updated 2 months ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Jan 16, 2024Updated 2 years ago
- An R package to interpret biological trends from DNA methylation data☆18May 24, 2022Updated 4 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Downstream Analysis☆21Oct 2, 2026Updated 2 weeks ago
- A merged read deduplication tool capable to perform merged read deduplication on single end data.☆14Sep 4, 2024Updated 2 years ago
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆32Apr 11, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 12 years ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆30Jan 15, 2026Updated 9 months ago
- A dotplot generator for large chromosomes☆41Oct 3, 2023Updated 3 years ago
- GONE: Scripts, programs and an example data set☆57May 12, 2026Updated 5 months ago
- bumphunter☆18Mar 19, 2024Updated 2 years ago
- Derives consensus sequences from a set of long noisy reads by clustering and error correction.☆17Jul 20, 2021Updated 5 years ago
- ☆18Jun 30, 2023Updated 3 years ago
- Scripts to run several protocols to process and analyze Next-Generation Sequencing data☆18Aug 3, 2023Updated 3 years ago
- R Code Examples Multi-dimensional/Panel Data☆24May 16, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆12Jul 1, 2026Updated 3 months ago
- OpenType font for writing dalecarlian runes using the alphabet.☆11Sep 18, 2021Updated 5 years ago
- Software package for estimating fine-scale recombination rate.☆19Jun 8, 2021Updated 5 years ago
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19May 16, 2025Updated last year
- A genome-wide IM blockwise likelihood estimation toolkit☆20Jun 24, 2024Updated 2 years ago
- Functional ANnoTAtion based on embedding space SImilArity☆22Sep 26, 2026Updated 3 weeks ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆22Jan 19, 2026Updated 8 months ago