Alternatives and similar repositories for IRFinder:

Users that are interested in IRFinder are comparing it to the libraries listed below

• deLaatLab / pipe4C
  4C-seq processing pipeline
  ☆23Updated 10 months ago
• LappalainenLab / lorals_paper_code
  ☆24Updated 2 years ago
• khuang28jhu / bs3
  BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
  ☆27Updated 5 years ago
• nerettilab / RepEnrich2
  RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.
  ☆38Updated 3 years ago
• shawnzhangyx / cvdc_scripts
  scripts for analyzing the CVDC data.
  ☆17Updated 5 years ago
• SGDDNB / translational_regulation
  Detection of differential translated genes using Ribo-seq
  ☆15Updated 3 years ago
• yezhengSTAT / CUTTag_tutorial
  Tutorial Website
  ☆56Updated 4 years ago
• olarerin / metaPlotR
  A Perl/R pipeline for plotting metagenes
  ☆37Updated 3 years ago
• dixonlab / hic_breakfinder
  ☆36Updated 5 years ago
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆22Updated last year
• zhongmicai / Hic_tools_collection
  ☆11Updated 5 years ago
• mhammell-laboratory / TElocal
  A package for quantifying transposable elements at a locus level for RNAseq datasets.
  ☆24Updated 2 weeks ago
• ma-compbio / Phylo-HMRF
  ☆16Updated 4 years ago
• mcgilldinglab / MATES
  A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data
  ☆22Updated last month
• plantformatics / Socrates
  ☆21Updated 8 months ago
• GuoliangLi-HZAU / ChIA-PET_Tool_V3
  ChIA-PET, HiChIP, PLAC-Seq data analysis, with linker detection, linker filter, or restriction process for HiChIP, mapping, call cluster …
  ☆17Updated 7 months ago
• BlanchetteLab / HIFI
  Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data
  ☆23Updated 2 years ago
• ay-lab / ATACProc
  ATAC-seq processing pipeline
  ☆32Updated 2 years ago
• YaoLab-Bioinfo / shinyChromosome
  an R/Shiny application for interactive creation of non-circular plots of whole genomes
  ☆45Updated 2 years ago
• biocorecrg / ExOrthist
  ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.
  ☆21Updated 2 months ago
• Linhua-Sun / Ath_Heat_Hi-C
  Bioinformatic analysis of RNA-Seq, WGBS, and Hi-C in Arabidopsis
  ☆7Updated 5 years ago
• ChenFengling / HiCpipe
  an efficient Hi-C data processing pipeline
  ☆15Updated 10 months ago
• shizhuoxing / scISA-Tools
  single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…
  ☆23Updated 7 months ago
• ay-lab / FitHiChIP
  Statistically Significant loops from HiChIP data
  ☆40Updated 10 months ago
• gxiaolab / REDITs
  RNA editing tests
  ☆16Updated 4 years ago
• mortazavilab / cerberus
  ☆16Updated 6 months ago
• zhongw2 / GeneTEFlow
  ☆23Updated 3 years ago
• shunliubio / easym6A
  Process m6A/MeRIP-seq data in a single or batch job mode
  ☆20Updated 4 years ago
• marvin-jens / find_circ
  tools to find circRNAs in RNA-seq data
  ☆42Updated 7 years ago
• xuzhougeng / RNA-seq-downstream-analysis
  Arabidopsis RNA_-seq downstream analysis shiny app
  ☆31Updated 5 years ago