mgreenig / loopgenLinks
SE(3) diffusion models for generating CDR loops
☆10Updated last year
Alternatives and similar repositories for loopgen
Users that are interested in loopgen are comparing it to the libraries listed below
Sorting:
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆33Updated 9 months ago
- Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction☆11Updated last year
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆32Updated 2 years ago
- Interface-aware molecular generative framework for protein-protein interaction modulators☆15Updated 7 months ago
- scripts to find PBD structures for cancer driver proteins☆31Updated 5 months ago
- ☆10Updated last year
- Modelling protein conformational landscape with Alphafold☆51Updated 2 weeks ago
- Folding-Docking-Affinity framework for protein-ligand affinity prediction☆27Updated 4 months ago
- Benchmarking code accompanying the release of `bioemu`☆39Updated last month
- ☆43Updated 4 months ago
- Bi-Encoder approach for large-scale protein-peptide binding search☆12Updated last year
- ☆15Updated 5 months ago
- PackDock: a Diffusion Based Side Chain Packing Model for Flexible Protein-Ligand Docking☆34Updated 10 months ago
- Molecular dynamics without molecules: searching the conformational space of proteins with generative neural networks☆11Updated 3 years ago
- Protein Sequence Evolutionary Information Language Model☆13Updated last year
- This is the first model that can simultaneously predict the RMSD of the ligand docking pose and the binding strength against the target.☆19Updated 7 months ago
- DyNoPy☆11Updated 11 months ago
- Some scripts that I keep using over and over.☆19Updated last month
- Deep generative modeling of protein structural ensembles☆23Updated 4 months ago
- Cyclic-peptide - protein complexes benchmark and associated scripts and data☆12Updated 11 months ago
- ☆23Updated 2 months ago
- A fast sampling and analysis tool for biomolecules☆16Updated 6 months ago
- Target-aware Variational Auto-encoders for Ligand Generation with Multimodal Protein Representation Learning☆30Updated last year
- ☆13Updated 4 months ago
- InteractionDrawer is a JavaScript library for the drawing of highly interactive 2D ligand interaction diagrams.☆22Updated last year
- Code and notebook for our paper "Assessing interaction recovery of predicted protein-ligand poses"☆18Updated 10 months ago
- Baseline model for PPB-Affinity benchmark data☆27Updated 2 months ago
- ☆20Updated 2 months ago
- Energy minimization post-processing used in PoseBusters☆12Updated 4 months ago
- Versatile human antibody sequence design☆18Updated 2 months ago