oxpig / GraphinityLinks
Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity
☆51Updated 3 months ago
Alternatives and similar repositories for Graphinity
Users that are interested in Graphinity are comparing it to the libraries listed below
Sorting:
- code for IDR binding paper 2025☆56Updated 8 months ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆66Updated 3 months ago
- AlphaBind code + model accompanying pre-print☆83Updated 3 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆122Updated 4 months ago
- Code for humanization of antibody and nanobody☆58Updated last month
- ☆78Updated 8 months ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆23Updated last year
- Active Learning-Assisted Directed Evolution for Protein Engineering☆70Updated this week
- ☆50Updated last year
- ☆71Updated 7 months ago
- Making Protein folding accessible to all!☆24Updated last year
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆74Updated 2 months ago
- Tool for modelling the CDRs of antibodies☆50Updated 2 years ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆66Updated 3 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆86Updated 4 months ago
- ☆70Updated 4 years ago
- ☆61Updated last year
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- ☆72Updated 5 years ago
- Fitness landscapes for antibodies☆89Updated last month
- Extension of ThermoMPNN for double mutant predictions☆43Updated 2 weeks ago
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆117Updated 6 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆45Updated 11 months ago
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆28Updated last year
- ☆47Updated 9 months ago
- Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile☆70Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆82Updated last year
- ☆37Updated 6 months ago
- Antibody paratope prediction using Graph Neural Networks with minimal feature vectors☆37Updated 2 years ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆56Updated 5 months ago