Alternatives and similar repositories for NanoBERTa-ASP

Users that are interested in NanoBERTa-ASP are comparing it to the libraries listed below

• Merck / AbLEF
  Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction
  ☆12Updated last year
• programmablebio / saltnpeppr
  An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders
  ☆16Updated 11 months ago
• haddocking / arctic3d
  Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
  ☆31Updated last month
• Furman-Lab / Peptide_docking_with_AF2_and_RosettAfold
  Code and data used in https://doi.org/10.1101/2021.08.01.454656
  ☆53Updated 3 years ago
• KULL-Centre / _2024_cagiada_stability
  ☆70Updated 5 months ago
• vendruscolo-lab / AlphaFold-IDP
  This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…
  ☆19Updated 8 months ago
• sokrypton / ColabBio
  random colab notebooks for biology
  ☆25Updated last week
• NasimAbdollahi / NodeCoder
  NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.
  ☆33Updated last year
• feiglab / idpgan
  ☆48Updated 8 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆51Updated 3 months ago
• bwicky / oligomer_hallucination
  ☆36Updated last year
• csi-greifflab / developability_profiling
  ☆25Updated last week
• luwei0917 / AlphaFold3_PPI
  ☆15Updated last year
• lamm-mit / ProteinMechanicsDiffusionDesign
  ☆28Updated last year
• oxpig / AbLang2
  An antibody-specific language model focusing on NGL prediction
  ☆30Updated last year
• LLNL / CRPCA
  Computationally Restoring the Potency of a Clinical Antibody
  ☆19Updated last year
• Lailabcode / DeepSCM
  A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…
  ☆28Updated 2 years ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆51Updated last month
• tommyhuangthu / EvoEF2
  Physical energy function for protein sequence design
  ☆33Updated 2 years ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆19Updated 2 months ago
• oxpig / PLAbDab
  The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…
  ☆27Updated last year
• oxpig / dlab-public
  Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"
  ☆31Updated 2 years ago
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆38Updated 11 months ago
• CDDLeiden / PCMol
  Multi-target de novo molecular generator conditioned on AlphaFold's latent protein embeddings.
  ☆66Updated 5 months ago
• CarbonMatrixLab / immunefold
  Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning
  ☆22Updated 5 months ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆30Updated last year
• stemylonas / DeepSurf
  A surface-based deep learning approach for the prediction of ligand binding sites on proteins
  ☆44Updated 2 years ago
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆29Updated last year
• sokrypton / roscon2024
  Tutorial files
  ☆11Updated last year
• LPDI-EPFL / FunFolDesData
  Rosetta FunFolDes – a general framework for the computational design of functional proteins.
  ☆21Updated 6 years ago