WangLabforComputationalBiology / NanoBERTa-ASPLinks
Predicting Nanobody Binding Epitopes Based on a Pretrained RoBERTa-based Model
☆15Updated last year
Alternatives and similar repositories for NanoBERTa-ASP
Users that are interested in NanoBERTa-ASP are comparing it to the libraries listed below
Sorting:
- Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction☆13Updated last year
- ☆50Updated 9 months ago
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆53Updated 3 years ago
- Some scripts that I keep using over and over.☆20Updated 3 months ago
- Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information☆32Updated 3 weeks ago
- ☆25Updated 2 months ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆34Updated last year
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆16Updated last year
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆33Updated last year
- ☆71Updated 7 months ago
- Metrics for our protein design competitions.☆35Updated 11 months ago
- Computationally Restoring the Potency of a Clinical Antibody☆18Updated last year
- dMaSIF implementation for google colab☆34Updated 2 years ago
- Physical energy function for protein sequence design☆33Updated 2 years ago
- ☆34Updated last year
- Code for deep learning guided design of dynamic proteins☆31Updated last year
- ☆29Updated 5 years ago
- Code for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"☆24Updated last month
- A surface-based deep learning approach for the prediction of ligand binding sites on proteins☆44Updated 2 years ago
- ☆36Updated last year
- Differentiable Pairing using Alignment-based Language Models☆24Updated last year
- Baseline model for PPB-Affinity benchmark data☆30Updated 5 months ago
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆28Updated last year
- Modelling protein conformational landscape with Alphafold☆53Updated 2 months ago
- Code for the paper "DLAB - Deep learning methods for structure-basedvirtual screening of antibodies"☆31Updated 3 years ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆56Updated 5 months ago
- DiffDock implementation that adds support for HPC execution using Slurm and Singularity☆26Updated 5 months ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆23Updated last year
- random colab notebooks for biology☆24Updated 2 months ago
- ☆27Updated 2 weeks ago