Alternatives and similar repositories for NanoBERTa-ASP

Users that are interested in NanoBERTa-ASP are comparing it to the libraries listed below

• Merck / AbLEF
  Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction
  ☆13Updated last year
• KULL-Centre / _2024_cagiada_stability
  ☆71Updated 8 months ago
• luwei0917 / AlphaFold3_PPI
  ☆15Updated last year
• feiglab / idpgan
  ☆50Updated 11 months ago
• csi-greifflab / developability_profiling
  ☆26Updated 3 months ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆21Updated 5 months ago
• oxpig / kasearch
  KA-Search: Rapid and exhaustive sequence identity search of known antibodies
  ☆23Updated last year
• psalveso / pyRIF
  Using Rotamer Interaction Fields from RIFGen/Dock in python
  ☆16Updated 4 years ago
• Furman-Lab / Peptide_docking_with_AF2_and_RosettAfold
  Code and data used in https://doi.org/10.1101/2021.08.01.454656
  ☆54Updated 3 years ago
• adaptyvbio / competition_metrics
  Metrics for our protein design competitions.
  ☆35Updated last year
• casperg92 / MaSIF_colab
  dMaSIF implementation for google colab
  ☆35Updated 2 years ago
• WeiLab-Biology / DeepProSite
  ☆34Updated last year
• haddocking / arctic3d
  Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
  ☆32Updated last week
• LLNL / CRPCA
  Computationally Restoring the Potency of a Clinical Antibody
  ☆18Updated last year
• bwicky / oligomer_hallucination
  ☆36Updated last year
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆35Updated 2 years ago
• gwlilabmit / FragFold
  Fragment binding prediction with ColabFold
  ☆38Updated last month
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆39Updated last year
• programmablebio / saltnpeppr
  An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders
  ☆16Updated last year
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆32Updated 2 years ago
• NasimAbdollahi / NodeCoder
  NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.
  ☆34Updated last year
• IBM / ReprogBERT
  Code for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"
  ☆24Updated 2 months ago
• Lailabcode / DeepViscosity
  DeepViscosity is a deep learning ANN model developed to predict high concentrated monoclonal antibody viscosity classes (Low <= 20cps, Hi…
  ☆18Updated 4 months ago
• sokrypton / ColabBio
  random colab notebooks for biology
  ☆25Updated 3 months ago
• aayush-shah14 / PeptideGPT
  ☆13Updated last year
• vendruscolo-lab / AlphaFold-IDP
  This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…
  ☆18Updated last month
• RosettaCommons / AF2_peptide_hallucination
  Code for designing binders to flexible peptides with AlphaFold2 Hallucination
  ☆28Updated last year
• cl666666 / GVP-MSA
  ☆13Updated 2 years ago
• cryoEM-CNIO / BinderFlow
  Code for running BinderFlow
  ☆49Updated 2 weeks ago
• Nucleus2014 / protease-gcnn-pytorch
  ☆21Updated 2 years ago