tjhwangxiong / TCGAplotLinks
A number of functions were generated to perform pan-cancer DEG analysis, correlation analysis between gene expression and TMB, MSI, TIME, and promoter methylation. Methods for visualization were provided in order to easily perform integrative pan-cancer multi-omics analysis.
☆122Updated 8 months ago
Alternatives and similar repositories for TCGAplot
Users that are interested in TCGAplot are comparing it to the libraries listed below
Sorting:
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.☆263Updated last week
- An implement R package to visualize GSEA results☆199Updated 3 months ago
- plots function for array☆98Updated last year
- Make TCGA download and prepare easy!☆148Updated 2 months ago
- Quantifying metabolism activity at the single-cell resolution☆147Updated 5 months ago
- This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset☆152Updated 4 years ago
- An end-to-end Single-Cell Omics analysis Pipeline designed to facilitate comprehensive analysis and exploration of single-cell omics data…☆100Updated last week
- Multi-Omics integration and VIsualization in Cancer Subtyping☆145Updated 4 years ago
- ☆114Updated 3 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆234Updated 2 years ago
- Scissor package☆243Updated last year
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆202Updated last month
- scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy…☆247Updated last week
- collected resource for scRNA-seq analysis☆67Updated 2 years ago
- The integration of single cell rank-based gene set enrichment analysis☆140Updated 5 months ago
- Shiny Interactive Web Apps for Single-Cell Data☆200Updated 7 months ago
- Some tools for plotting single-cell data☆176Updated 6 months ago
- ☆73Updated 9 months ago
- Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".☆121Updated last year
- The goal of `ggVolcano` is to help users make a beautiful volcano map more easily, including general volcano plot(`ggvolcano`), gradient …☆91Updated 2 years ago
- Convert Seurat objects to 10x Genomics Loupe files.☆145Updated 5 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆212Updated 4 months ago
- ☆178Updated 7 months ago
- scDIOR: Single cell data IO softwaRe☆150Updated 3 years ago
- Cell types enrichment analysis☆204Updated last year
- ☆41Updated last year
- Create stacked violin plot☆51Updated 3 years ago
- Machine learning-based integration model with elegant performance☆171Updated 2 months ago
- Dataset distribution for Seurat☆148Updated 9 months ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago