tjhwangxiong / TCGAplot
A number of functions were generated to perform pan-cancer DEG analysis, correlation analysis between gene expression and TMB, MSI, TIME, and promoter methylation. Methods for visualization were provided in order to easily perform integrative pan-cancer multi-omics analysis.
☆89Updated 3 months ago
Alternatives and similar repositories for TCGAplot:
Users that are interested in TCGAplot are comparing it to the libraries listed below
- plots function for array☆91Updated 7 months ago
- An implement R package to visualize GSEA results☆144Updated 2 weeks ago
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.☆222Updated 3 weeks ago
- The goal of `ggVolcano` is to help users make a beautiful volcano map more easily, including general volcano plot(`ggvolcano`), gradient …☆78Updated last year
- ☆102Updated 2 years ago
- Shiny Interactive Web Apps for Single-Cell Data☆168Updated 11 months ago
- Clone of the Bioconductor repository for the SingleR package.☆182Updated 3 weeks ago
- Multi-Omics integration and VIsualization in Cancer Subtyping☆137Updated 3 years ago
- This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset☆145Updated 4 years ago
- A Shiny web app for mapping datasets using Seurat v4☆119Updated 2 months ago
- ☆92Updated 5 years ago
- Machine learning-based integration model with elegant performance☆95Updated 6 months ago
- ☆119Updated 2 weeks ago
- R Package for Single-Cell Dataset Processing and Visualization☆61Updated 3 years ago
- ☆36Updated 4 years ago
- Machine learning-based integrative analysis develops an immune-derived lncRNA signature for improving clinical outcomes in colorectal can…☆104Updated 2 years ago
- Dataset distribution for Seurat☆134Updated last year
- scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy…☆135Updated 2 weeks ago
- A package for reference mapping and nice visualization☆19Updated 9 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆237Updated 2 weeks ago
- ☆19Updated 2 months ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆73Updated 4 years ago
- A Toolkit for Construct Tree-shaped Trajectory for Flow and Mass Cytometry data☆24Updated 4 years ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆90Updated 3 months ago
- Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer☆72Updated last year
- Quantifying metabolism activity at the single-cell resolution☆125Updated 5 months ago
- Cell types enrichment analysis☆191Updated 8 months ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated last year
- ☆64Updated 2 years ago
- Make TCGA download and prepare easy!☆115Updated 9 months ago