A number of functions were generated to perform pan-cancer DEG analysis, correlation analysis between gene expression and TMB, MSI, TIME, and promoter methylation. Methods for visualization were provided in order to easily perform integrative pan-cancer multi-omics analysis.
☆125Mar 28, 2025Updated 11 months ago
Alternatives and similar repositories for TCGAplot
Users that are interested in TCGAplot are comparing it to the libraries listed below
Sorting:
- Machine learning-based integrative analysis develops an immune-derived lncRNA signature for improving clinical outcomes in colorectal can…☆128May 30, 2025Updated 9 months ago
- Multi-Omics integration and VIsualization in Cancer Subtyping☆146Jul 19, 2021Updated 4 years ago
- IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.☆276Jan 3, 2026Updated last month
- Machine learning-based integration model with elegant performance☆183Sep 23, 2025Updated 5 months ago
- The ProteoCancer Analysis Suite (PCAS) utilizes the CPTAC database to integrate proteomics, phosphoproteomics, and transcriptomics for ca…☆21Jun 18, 2025Updated 8 months ago
- An implement R package to visualize GSEA results☆210Dec 8, 2025Updated 2 months ago
- 📦R包:Make TCGA download and prepare easy!☆153Sep 19, 2025Updated 5 months ago
- R tools for analysis and visualization of single-cell subclustering data☆17Sep 9, 2025Updated 5 months ago
- Useful functions to make your scRNA-seq plot more cool!☆374Dec 24, 2025Updated 2 months ago
- ☆15Nov 2, 2020Updated 5 years ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆54Jan 21, 2026Updated last month
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆627Nov 28, 2025Updated 3 months ago
- A R package for advanced single cell data viz☆73Aug 29, 2025Updated 6 months ago
- Quantifying metabolism activity at the single-cell resolution☆153Feb 18, 2026Updated last week
- Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer☆82Dec 16, 2023Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆31Feb 28, 2022Updated 4 years ago
- An R package for drug response prediction and drug-gene association prediction.☆25May 9, 2025Updated 9 months ago
- Identification and Validation Robust Prognostic Biomarkers and Signatures in Solid Tumors☆48Apr 1, 2025Updated 11 months ago
- Codes for the scPLC project☆74Dec 2, 2022Updated 3 years ago
- ☆18Oct 23, 2023Updated 2 years ago
- Spatial Tumor Microenvironment (SpatialTME) database is a comprehensive database designed for characterize tumor spatial microenvironment…☆12Dec 4, 2023Updated 2 years ago
- One-step to Cluster and Visualize Gene Expression Matrix☆355Jan 27, 2026Updated last month
- Deconvolution of spatial transcriptomics at single-cell resolution☆20Sep 19, 2024Updated last year
- Calculating Tumor microenvironment score☆29Jan 20, 2023Updated 3 years ago
- Transcriptomics Visualization R package.☆76Apr 16, 2025Updated 10 months ago
- ☆12Mar 5, 2024Updated last year
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆81Oct 29, 2024Updated last year
- Construct Tumor Transition Zone Microenvironment☆55Jun 25, 2025Updated 8 months ago
- The source code of web server TIP, including example data.☆21Mar 28, 2019Updated 6 years ago
- These are scripts for pan-cacner B cells analyses.☆58Jul 22, 2024Updated last year
- ☆113Nov 12, 2022Updated 3 years ago
- ☆18Oct 13, 2023Updated 2 years ago
- Inferring CNV from Single-Cell RNA-Seq☆653Nov 14, 2025Updated 3 months ago
- ☆40Mar 5, 2024Updated last year
- An annotation package for ggplot plot☆119Nov 17, 2025Updated 3 months ago
- Scissor package☆252May 10, 2024Updated last year
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆223Dec 26, 2025Updated 2 months ago
- <Bioinformatics> scCancer2: data-driven in-depth annotations of the tumor microenvironment at single-level resolution☆27Aug 27, 2025Updated 6 months ago
- Bayesian network plot for the enrichment analysis results☆67Oct 2, 2024Updated last year