Alternatives and similar repositories for TCGAplot

Users that are interested in TCGAplot are comparing it to the libraries listed below

• junjunlab / GseaVis
  An implement R package to visualize GSEA results
  ☆181Updated this week
• IOBR / IOBR
  IOBR is an R package to perform comprehensive analysis of tumor microenvironment and signatures for immuno-oncology.
  ☆253Updated 3 months ago
• xjsun1221 / tinyarray
  plots function for array
  ☆94Updated last year
• jmzeng1314 / AnnoProbe
  ☆110Updated 2 years ago
• pwwang / scplotter
  scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy…
  ☆216Updated 3 weeks ago
• xlucpu / MOVICS
  Multi-Omics integration and VIsualization in Cancer Subtyping
  ☆146Updated 4 years ago
• czbiohub-sf / scell_lung_adenocarcinoma
  This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset
  ☆150Updated 4 years ago
• ayueme / easyTCGA
  Make TCGA download and prepare easy!
  ☆136Updated last year
• wu-yc / scMetabolism
  Quantifying metabolism activity at the single-cell resolution
  ☆138Updated 2 months ago
• WXlab-NJMU / scrna-recom
  collected resource for scRNA-seq analysis
  ☆63Updated 2 years ago
• zktuong / ktplots
  Some tools for plotting single-cell data
  ☆174Updated 3 months ago
• sunduanchen / Scissor
  Scissor package
  ☆231Updated last year
• huayc09 / SeuratExtend
  ☆163Updated last week
• SGDDNB / ShinyCell
  Shiny Interactive Web Apps for Single-Cell Data
  ☆193Updated 4 months ago
• digitalcytometry / cytotrace2
  CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.
  ☆164Updated 5 months ago
• BioSenior / ggVolcano
  The goal of `ggVolcano` is to help users make a beautiful volcano map more easily, including general volcano plot(`ggvolcano`), gradient …
  ☆90Updated 2 years ago
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆193Updated last month
• enblacar / SCpubr
  Generate high quality, publication ready visualizations for single cell transcriptomics data.
  ☆206Updated 3 weeks ago
• JarningGau / ProjectSVR
  A package for reference mapping and nice visualization
  ☆22Updated last year
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆231Updated 2 years ago
• satijalab / seurat-data
  Dataset distribution for Seurat
  ☆143Updated 5 months ago
• xjsun1221 / RSEM_with_limma_edgeR_Deseq2
  ☆37Updated 5 years ago
• neurorestore / Libra
  ☆174Updated 3 months ago
• l-magnificence / Mime
  Machine learning-based integration model with elegant performance
  ☆152Updated 3 weeks ago
• JhuangLab / CytoTree
  A Toolkit for Construct Tree-shaped Trajectory for Flow and Mass Cytometry data
  ☆28Updated 4 years ago
• chuiqin / irGSEA
  The integration of single cell rank-based gene set enrichment analysis
  ☆130Updated last month
• Zaoqu-Liu / BioEnricher
  Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer
  ☆79Updated last year
• Sijin-ZhangLab / PanMyeloid
  ☆106Updated 4 years ago
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆198Updated 3 months ago
• ycl6 / StackedVlnPlot
  Create stacked violin plot
  ☆49Updated 3 years ago