micro-read Fast Alignment Search Tool
☆20Jul 19, 2019Updated 7 years ago
Alternatives and similar repositories for mrfast
Users that are interested in mrfast are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Source code of the processing-in-memory simulator used in the GRIM-Filter paper published at BMC Genomics in 2018: "GRIM-Filter: Fast See…☆11Feb 5, 2018Updated 8 years ago
- mrsFAST: micro-read substitution-only Fast Alignment Search Tool☆27Sep 22, 2020Updated 5 years ago
- GateKeeper: Fast Alignment Filter for DNA Short Read Mapping☆22Mar 5, 2019Updated 7 years ago
- Source code for the software implementations of the GenASM algorithms proposed in our MICRO 2020 paper: Senol Cali et. al., "GenASM: A Hi…☆32Dec 19, 2022Updated 3 years ago
- A FASTQ lossless compression algorithm especially designed for nanopore sequencing FASTQ files.☆10Jul 2, 2020Updated 6 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Source code for the Shifted Hamming Distance (SHD) filtering mechanism for sequence alignment. Described in the Bioinformatics journal pa…☆36Mar 29, 2020Updated 6 years ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆23May 29, 2018Updated 8 years ago
- Shouji is fast and accurate pre-alignment filter for banded sequence alignment calculation. Described in the Bioinformatics journal paper…☆19Jun 3, 2019Updated 7 years ago
- GenStore is the first in-storage processing system designed for genome sequence analysis that greatly reduces both data movement and comp…☆15Apr 6, 2022Updated 4 years ago
- A Nextflow implementation of the Tuxedo Suite of Tools: HISAT, StringTie & Ballgown☆10Apr 2, 2018Updated 8 years ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆17Jun 4, 2019Updated 7 years ago
- FQSqueezer - FASTQ compressor based on k-mer statistics☆18Feb 24, 2024Updated 2 years ago
- aCcelerated Alignment-FrEe sequence analysis☆13May 8, 2018Updated 8 years ago
- Version II of Mandalorion☆32Feb 1, 2019Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆28May 23, 2024Updated 2 years ago
- k-mer similarity analysis pipeline☆23Apr 30, 2026Updated 2 months ago
- GEM-Mapper v3☆59Nov 25, 2025Updated 7 months ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆23Jul 30, 2025Updated 11 months ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 5 years ago
- A hash map using the BooPHF perfect hash function☆13Sep 25, 2016Updated 9 years ago
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆11Sep 21, 2021Updated 4 years ago
- ☆15Aug 22, 2023Updated 2 years ago
- Characterization of Structural Variation in Chinese samples☆17Dec 22, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Feb 23, 2021Updated 5 years ago
- Variant call adjudication☆17Jun 13, 2024Updated 2 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆19Aug 6, 2025Updated 11 months ago
- Personalized prioritization of driver genes in cancer☆10Mar 14, 2022Updated 4 years ago
- ☆11Nov 21, 2025Updated 8 months ago
- A shiny application to visualize MCscan result☆37Jun 26, 2026Updated 3 weeks ago
- ☆20Nov 30, 2023Updated 2 years ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- Prediction by Partial Matching☆16Apr 3, 2020Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Gene Family Annotation Workflow☆12Mar 26, 2024Updated 2 years ago
- Segmental Duplication Assembler (SDA).☆44May 7, 2023Updated 3 years ago
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆27May 9, 2024Updated 2 years ago
- Genoogle is a software for fast similar DNA sequence searching. It is a full functional similar genetics searching tool, having a text mo…☆13Apr 27, 2016Updated 10 years ago
- The shiny app that accompanies the ngsReports R package☆14Jun 10, 2021Updated 5 years ago
- Repository for supplemental material of manuscripts☆19Jun 30, 2021Updated 5 years ago
- Simple and fast MinHash implementation in C with Python wrapper☆13Jul 24, 2025Updated 11 months ago