Alternatives and similar repositories for mrfast

Users that are interested in mrfast are comparing it to the libraries listed below

• CMU-SAFARI / Apollo
  Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a sing…
  ☆27Updated 5 years ago
• UCLA-VAST / minimap2-acceleration
  Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository
  ☆34Updated last year
• arshajii / ema
  Fast & accurate alignment of barcoded short-reads
  ☆32Updated 2 years ago
• CMU-SAFARI / Scrooge
  Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…
  ☆38Updated 2 years ago
• CMU-SAFARI / BLEND
  BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…
  ☆43Updated 2 years ago
• ydLiu-HIT / deSALT
  deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
  ☆44Updated 3 years ago
• ekg / fastahack
  utilities for indexing and sequence extraction from FASTA files
  ☆59Updated 4 years ago
• muellan / metacache
  memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
  ☆64Updated 5 months ago
• albertozeni / LOGAN
  LOGAN: High-Performance Multi-GPU X-Drop Long-Read Alignment.
  ☆29Updated 3 years ago
• harisankarsadasivan / RawMap
  Complements Minimap2 for a fast and efficient Read-Until pipeline
  ☆12Updated 2 years ago
• VGP / vgp-tools
  ☆28Updated 6 months ago
• ikmb / eagleimp
  ☆27Updated last month
• adigenova / fast-sg
  Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.
  ☆22Updated 7 years ago
• lh3 / rmaxcut
  An experimental tool to find approximate max-cuts in a large graph
  ☆10Updated 4 years ago
• PASSIONLab / BELLA
  BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper
  ☆51Updated 3 years ago
• Oshlack / necklace
  Combine reference and assembled transcriptomes for RNA-Seq analysis
  ☆22Updated 5 years ago
• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 3 years ago
• ksahlin / strobemers
  A repository for generating strobemers and evalaution
  ☆79Updated last year
• sfu-compbio / mrsfast
  mrsFAST: micro-read substitution-only Fast Alignment Search Tool
  ☆28Updated 5 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 4 years ago
• TravisWheelerLab / AvxWindowFmIndex
  A fast, AVX2 and ARM Neon accelerated FM index library
  ☆35Updated 10 months ago
• bcgsc / physlr
  Construct a Physical Map from Linked Reads
  ☆18Updated last year
• mkirsche / sapling
  SAPLING: Suffix Array Piecewise Linear INdex for Genomics
  ☆25Updated 5 years ago
• ddiazdom / lcg
  Efficient, parallel compression for terabyte-scale data
  ☆52Updated last month
• CMU-SAFARI / Shouji
  Shouji is fast and accurate pre-alignment filter for banded sequence alignment calculation. Described in the Bioinformatics journal paper…
  ☆18Updated 6 years ago
• theLongLab / CATE
  A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests and viral simulations at scale. Related manuscr…
  ☆15Updated 2 months ago
• a-ludi / dentist
  Close assembly gaps using long-reads at high accuracy.
  ☆49Updated last year
• hasindu2008 / slow5lib
  slow5lib is a software library for reading & writing SLOW5 files.
  ☆47Updated 3 months ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 5 years ago
• rvolden / C3POa
  Computational pipeline for calling consensi on R2C2 nanopore data
  ☆31Updated 3 years ago