BilkentCompGen / mrfast
micro-read Fast Alignment Search Tool
☆19Updated 5 years ago
Alternatives and similar repositories for mrfast:
Users that are interested in mrfast are comparing it to the libraries listed below
- linearize and simplify variation graphs using blocked partial order alignment☆58Updated last week
- Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a sing…☆27Updated 4 years ago
- Lift-over alignments from variant-aware references☆34Updated last year
- Close assembly gaps using long-reads at high accuracy.☆48Updated last year
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago
- efficient alignment of strings to partially ordered string graphs☆33Updated 3 years ago
- ☆28Updated last year
- Efficient, parallel compression for terabyte-scale data☆39Updated last month
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 2 years ago
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆42Updated last year
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆67Updated 2 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated 11 months ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated 8 months ago
- Bidirectional WFA (Paper)☆44Updated 9 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 2 years ago
- Building upon BWA-MEM2, this repository includes performance improvements to the seeding and mate-rescue steps.☆13Updated 3 years ago
- Library for the Handle Graph abstraction☆23Updated 2 months ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 3 years ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆22Updated 6 years ago
- Optimized sequence graph implementations for graph genomics☆34Updated 2 months ago
- Parallel Sequence to Graph Alignment☆35Updated 2 years ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 3 years ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 2 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- A repository for generating strobemers and evalaution☆77Updated 10 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- Fast & accurate alignment of barcoded short-reads☆33Updated last year
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆42Updated 5 years ago
- GBWT-based handle graph☆31Updated last week