GenStore is the first in-storage processing system designed for genome sequence analysis that greatly reduces both data movement and computational overheads of genome sequence analysis by exploiting low-cost and accurate in-storage filters. Described in the ASPLOS 2022 paper by Mansouri Ghiasi et al. at https://people.inf.ethz.ch/omutlu/pub/Ge…
☆15Apr 6, 2022Updated 4 years ago
Alternatives and similar repositories for GenStore
Users that are interested in GenStore are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A PIM instrumentation, compilation, execution, simulation, and evaluation repository for BLIMP-style architectures.☆17May 12, 2022Updated 3 years ago
- micro-read Fast Alignment Search Tool☆19Jul 19, 2019Updated 6 years ago
- Soft-logic designs and HAL libraries for various subsystems found in Oxide hardware.☆22Updated this week
- ☆17Nov 8, 2024Updated last year
- ☆20Jan 31, 2026Updated 3 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A FASTQ lossless compression algorithm especially designed for nanopore sequencing FASTQ files.☆10Jul 2, 2020Updated 5 years ago
- ☆30Apr 26, 2019Updated 7 years ago
- GateKeeper: Fast Alignment Filter for DNA Short Read Mapping☆21Mar 5, 2019Updated 7 years ago
- Codes for MO's Trading☆15Mar 20, 2022Updated 4 years ago
- ☆12Sep 11, 2020Updated 5 years ago
- A binary instrumentation tool to analyze load instructions in any off-the-shelf x86(-64) program. Described by Bera et al. in https://arx…☆24Jun 30, 2024Updated last year
- ☆11May 30, 2024Updated last year
- Genoogle is a software for fast similar DNA sequence searching. It is a full functional similar genetics searching tool, having a text mo…☆13Apr 27, 2016Updated 10 years ago
- Simple and fast MinHash implementation in C with Python wrapper☆13Jul 24, 2025Updated 9 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆13Jan 28, 2026Updated 3 months ago
- HeteroGen: transpiling C to heterogeneous HLS code with automated test generation and program repair (ASPLOS 2022)☆16Sep 25, 2024Updated last year
- MQSim is a fast & accurate simulator for modern multi-queue (MQ) and SATA SSDs. MQSim faithfully models new high-bandwidth protocol imple…☆358Aug 25, 2025Updated 8 months ago
- ZPrize entry for Accelerating NTT Operations on an FPGA☆16Nov 18, 2022Updated 3 years ago
- ☆27Nov 14, 2025Updated 5 months ago
- Identifies duplicate reads. This tool locates and tags duplicate reads in a coordinate ordered SAM or BAM file.☆20Jan 21, 2026Updated 3 months ago
- Prediction by Partial Matching☆16Apr 3, 2020Updated 6 years ago
- ☆27Aug 18, 2019Updated 6 years ago
- "Middleware" (infrastructure) for host-FPGA applications (e.g., accelerators)☆19Sep 26, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This repository contains code used to parse fio normal output (as in non json)☆16Feb 15, 2024Updated 2 years ago
- ☆17Aug 7, 2023Updated 2 years ago
- An efficient DNA sequence compressor using Neural Networks☆15Jan 25, 2023Updated 3 years ago
- PyGim is the first runtime framework to efficiently execute Graph Neural Networks (GNNs) on real Processing-in-Memory systems. It provide…☆36Apr 23, 2025Updated last year
- Co-processor for whole genome alignment☆13Jun 6, 2020Updated 5 years ago
- ☆16Apr 14, 2025Updated last year
- Source code for the software implementations of the GenASM algorithms proposed in our MICRO 2020 paper: Senol Cali et. al., "GenASM: A Hi…☆31Dec 19, 2022Updated 3 years ago
- ☆14Mar 8, 2023Updated 3 years ago
- ☆31May 31, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A space-efficient compressor based on the Re-Pair grammar☆10Apr 6, 2017Updated 9 years ago
- SPAA'24: PASGAL: Parallel And Scalable Graph Algorithm Library☆11Apr 11, 2026Updated 3 weeks ago
- ☆28Nov 29, 2024Updated last year
- Compression☆18Jul 1, 2020Updated 5 years ago
- Polycircuit is an FHE components library built via FHERMA competitions☆21Jul 10, 2025Updated 9 months ago
- An efficient storage system for concurrent graph processing☆10Feb 1, 2021Updated 5 years ago
- Complier Principle Assignment of BUAA☆10Dec 30, 2016Updated 9 years ago